@text
 
		Contents of file DNA.structure.KIN:
*{Kin 1}* DNA base pairs (A-T, G-C), with H-bonds & atom balls.
*{Kin 2}* B form DNA duplex, 12 base pairs.
*{Kin 3}* A form DNA duplex, 8 base pairs.
*{Kin 4}* Z form lefthanded DNA duplex, 10 base pairs.
*{Kin 5}* 4-Arm Holliday Junction structure.
*{Kin 6}* TAE DNA tile for DNA nanoengineering.
    
    
   *{Kinemage 1}* shows the Watson-Crick base-pairing arrangement, for one A-T pair and one G-C pair in B-DNA conformation.  The non-C, non-H atoms are marked with color-coded balls: O in red, N in blue, and P in yellowtint (H atoms are shown only for bases).  Here and in the other kinemages, the bases are color-coded as G (guanine) seagreen, C (cytosine) yellow, A (adenine) pink, and T or U (thymine, or uridine in RNA) skyblue;  the sugar-phosphate backbone is in white.  The base-pair hydrogen bonds are shown in purple: two for the A-T pair and three for the G-C pair.
   The two bases of a pair lie in very nearly but not precisely the same plane (turn on all the strands and go to View3 and tilt to line up each base); the commonest distortion is a torsional twist between the two bases, called "propeller twist".  Adjacent base pairs are also very nearly parallel to each other, with parts of their aromatic rings stacked in van der Waals contact (a separation of about 3.5A).  This base-stacking interaction is quite important, as well as the base-pair H-bonds, in making double-helix conformations of DNA very favorable.  Notice that DNA is an electrostatically rich macromolecule: the phosphates of the backbone are negatively charged, and there are several potential H-bonding sites on the sides of each base, in addition to the ones that form the base-pair H-bonds.  Waters and counter-ions interact strongly with DNA, and proteins can interact non-specifically with the charged backbone.
   Animate again to see each of the base pairs isolated.  The 4 major-groove recognition sites on the edge of each base pair are labeled: as H-bond donors, H-bond acceptors, hydrogen atoms, or methyl groups.  Since each list of types is asymmetrical, the arrangement of those recognition sites as seen looking into the major groove is distinct for each of the four base-pair types (GC, CG, AT, or TA).
 
   *{Kinemage 2}* shows a 12-base-pair duplex of B-form DNA, which is by far the most common conformation of DNA under biological conditions.  Each strand here has the sequence CGCGAATTCGCG, which makes a completely self-complementary double helix. There are 4 A-T pairs in the center (pink & blue) and 4 G-C pairs at each end (green & yellow).  Choose View2 to look from one end of the double helix; the sugar-phosphate backbone is at the outside and the bases near the center.   The double helix is righthanded, with the strands antiparallel and about 11 base pairs per turn.  Each base and each unit of the backbone has approximately the same conformation, although minor variations can be important to DNA bending, stability, and recognition.
   Choose View3 to look along the major groove (at the right-hand side), which gives DNA-binding proteins access to the H-bonding recognition sites on the edges of the base-pairs, as shown in Kin. 1.  Choose View4 to look along the minor groove (at the left-hand side); it not only has less specific Hbonding groups on the base edges, but is also narrower and less accessible to binding proteins.  Small-molecule drugs can bind in either groove, and some of them can also interact by "intercalating": sliding between adjacent base-pairs and pushing them apart.
 
   *{Kinemage 3}* shows an 8-base-pair duplex of A form DNA.  DNA adopts the A conformation only under non-physiological conditions, but it is the most common conformation for RNA (e.g., much of the tRNA).  The A double helix is righthanded and antiparallel, with about 10 base pairs per turn.  This example has two identical (self-complementary) strands, with the sequence GGGATCCC.  In A form, the base pairs are significantly tilted rather than perpendicular to the helix axis, and the sugar rings lie approximately in the plane of the outer helix cylinder, rather than radially as in B DNA.  Choose View2 to look from one end, showing that the A-DNA base-pairs do not pass across the central axis of the double helix.  The major groove (at right in View3) is quite wide and deep, and the minor groove (at left in View4) quite shallow.
 
   *{Kinemage 4}* shows the Z form of DNA, which occurs under biological conditions in vitro for some sequences (such as repeating CGCG), although whether or not it occurs in cells is uncertain.  In this case, the Z conformation was stabilized by demethylation, and the 6-base-pair duplex of the crystal structure was here artificially lengthened by superposition onto itself, in order to show the Z structure more clearly.  Z DNA is quite dramatically different from A or B form - the Z double helix is left-handed, and alternate residues have quite different conformations (sugar out and backbone extended, vs sugar in and backbone curled), giving the overall backbone a zigzag path (from which the name comes).  Each base pair has one end with sugar out and the other end with sugar in.  The helix is somewhat thinner and more elongated than for A or B.
   View2 looks from one end of the Z double helix, showing that the bases lie almost at the outside.  View3 is a close-up of a section of Z DNA backbone, to show how different the conformations are for every other residue: on this strand the even residues are nearly extended and on the outside, while the odd residues are curled up and much further toward the middle.  View4 is another close-up, this time to emphasize the alternating in-and-out positions of adjacent bases.
   Choose View5 and turn on "labels".  This looks along what would be the major groove of the Z DNA (on the right side), but the bases are so far toward the outside that there is no groove.  View6 looks along the minor groove, which is deep and narrow.
 
   *{Kinemage 5}* shows a 4-Arm Holliday Junction structure.  
 coordinates from file: /Users/thomlabean/Desktop/HollidayJ.pdb 
HEADER    DNA                                     22-APR-99   XXXX              
TITLE     THE STRUCTURE OF A DECAMER FORMING A FOUR-WAY JUNCTION
COMPND    5'-D(*CP*CP*GP*GP*GP*AP*CP*CP*GP*G)-3'                                
KEYWDS    G:A MISMATCHES, FOUR-WAY-JUNCTION                                     
AUTHOR    M.ORTIZ-LOMBARDIA, M.COLL                                             

   *{Kinemage 6}* shows a TAE DNA tile composed of 3 co-planar double helices, 4 Holliday junction-like cross-over points, encoded on 6 oligonucleotide strands.  Note that the geometry of some of the cross-over points has not been optimized and does not accurately reflect the expected molecular structure.
 
 

    These kinemages were modified by Thom LaBean (2006) from earlier versions Copyright 1999 by Jane S. and David C. Richardson.  Permission freely granted for educational, research, and personal use.  For program updates and more information, see http://kinemage.biochem.duke.edu.



@kinemage 1
@caption  
Animated tour of DNA base pairs (B form) - one G-C and one A-T pair, with sugar-phosphate backbone (white), base-pair H-bonds (purple), and non-C atoms marked with colored balls (red O, blue N, and yellow P); H atoms (gray) are shown only on bases.  The bases are color-coded:  G seagreen, C yellow, A pink, and T skyblue.  (from PDB file 2BNA)
@onewidth 
@viewid {nucleotide}
@span 12.711387
@zslab 150.0
@center 18.653 18.537 16.727
@matrix -0.8853 0.4029 0.2323 0.4342 0.895 0.1025 -0.1667 0.1916 -0.9672
@2viewid {top}
@2zoom 1.18 
@2zslab 150 
@2center 14.695 20.444 13.115 
@2matrix 
0.647461 -0.743479 0.167427 0.685604 0.664172 0.298025 -0.332783 -0.078163 0.939760 
@3viewid {side}
@3zoom 1.31
@3zslab 130
@3center 14.628 20.468 14.15
@3matrix
0.51994 -.57786 .62908 -.63614 .22956 .73664 -.57008 -.78319 -.24824
@4viewid {GC only}
@4zoom 1.42 
@4zslab 80 
@4center 15.647 21.644 18.157 
@4matrix 
0.373240 0.920079 -0.118934 0.886176 -0.391517 -0.247794 -0.274559 -0.012919 -0.961485 
@5viewid {AT only}
@5zoom 1.42 
@5zslab 80 
@5center 14.274 20.759 11.897 
@5matrix 
0.884303 -0.460863 0.074921 0.440903 0.877027 0.190845 -0.153670 -0.135728 0.978758 
@group {G nucleotide}  
@subgroup {Backbone}  dominant  
@balllist {mc O} color= red radius= .2
{o3* c a 3} 23.36 19.464 18.717
{o1p g a 4} 23.427 19.617 16.175
{o2p g a 4} 24.895 17.978 17.377
{o5* g a 4} 22.405 17.628 17.363
{o4* g a 4} 19.672 17.243 18.381
{o3* g a 4} 19.884 14.234 17.37
@balllist {mc P} color= yellow radius= .3
{p g a 4} 23.59 18.696 17.329
@vectorlist {mc} color= white
{o1p g a 4}P 23.427 19.617 16.175 {p g a 4} 23.59 18.696 17.329
{o2p g a 4} 24.895 17.978 17.377
{o3* c a 3}P 23.36 19.464 18.717 {p g a 4} 23.59 18.696 17.329
{o5* g a 4} 22.405 17.628 17.363
{c5* g a 4} 22.066 16.97 18.609
{c4* g a 4} 20.744 16.272 18.416
{o4* g a 4} 19.672 17.243 18.381
{c4* g a 4} P 20.744 16.272 18.416 {c3* g a 4} 20.623 15.447 17.145
{o3* g a 4} 19.884 14.234 17.37
{c3* g a 4} P 20.623 15.447 17.145 {c2* g a 4} 19.954 16.437 16.183
{o4* g a 4} P 19.672 17.243 18.381 {c1* g a 4} 19. 17.157 17.12
{c2* g a 4} 19.954 16.437 16.183
@subgroup {Base}  dominant 
@balllist {scn g} color= blue radius= .2
{n9 g a 4} 18.653 18.537 16.727
{n7 g a 4} 18.681 20.702 16.066
{n1 g a 4} 15.196 20.359 17.071
{n2 g a 4} 14.078 18.481 17.858
{n3 g a 4} 16.351 18.329 17.322
@balllist {sco} color= red radius= .2
{o6 g a 4} 16.005 22.279 16.257
@vectorlist {G} color= sea
{c1* g a 4} P 19. 17.157 17.12 {n9 g a 4} 18.653 18.537 16.727
{c8 g a 4} 19.399 19.565 16.205
{n7 g a 4} 18.681 20.702 16.066
{c5 g a 4} 17.445 20.357 16.508
{c6 g a 4} 16.234 21.119 16.598
{o6 g a 4} 16.005 22.279 16.257
{c6 g a 4} P 16.234 21.119 16.598 {n1 g a 4} 15.196 20.359 17.071
{c2 g a 4} 15.236 19.043 17.418
{n2 g a 4} 14.078 18.481 17.858
{c2 g a 4} P 15.236 19.043 17.418 {n3 g a 4} 16.351 18.329 17.322
{c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{n9 g a 4} P 18.653 18.537 16.727 {c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{c4 g a 4} P 17.398 19.047 16.88 {n3 g a 4} 16.351 18.329 17.322
 

@group {2 base pairs}   off  
@subgroup {DNA a str} dominant   
@balllist {mc O} color= red radius= .2
{o3* c a 3} 23.36 19.464 18.717
{o1p g a 4} 23.427 19.617 16.175
{o2p g a 4} 24.895 17.978 17.377
{o5* g a 4} 22.405 17.628 17.363
{o4* g a 4} 19.672 17.243 18.381
{o3* g a 4} 19.884 14.234 17.37
{o1p a a 5} 20.176 13.56 14.91
{o2p a a 5} 20.452 11.905 16.759
{o5* a a 5} 18.176 12.817 16.216
{o4* a a 5} 15.788 15.005 16.486
{o3* a a 5} 14.06 12.283 16.021
@balllist {mc P} color= yellow radius= .3
{p g a 4} 23.59 18.696 17.329
{p a a 5} 19.756 13.088 16.256
@vectorlist {mc} color= white
{o1p g a 4}P 23.427 19.617 16.175 {p g a 4} 23.59 18.696 17.329
{o2p g a 4} 24.895 17.978 17.377
{o3* c a 3}P 23.36 19.464 18.717 {p g a 4} 23.59 18.696 17.329
{o5* g a 4} 22.405 17.628 17.363
{c5* g a 4} 22.066 16.97 18.609
{c4* g a 4} 20.744 16.272 18.416
{o4* g a 4} 19.672 17.243 18.381
{c4* g a 4} P 20.744 16.272 18.416 {c3* g a 4} 20.623 15.447 17.145
{o3* g a 4} 19.884 14.234 17.37
{c3* g a 4} P 20.623 15.447 17.145 {c2* g a 4} 19.954 16.437 16.183
{o4* g a 4} P 19.672 17.243 18.381 {c1* g a 4} 19. 17.157 17.12
{c2* g a 4} 19.954 16.437 16.183
{o3* g a 4} P 19.884 14.234 17.37 {p a a 5} 19.756 13.088 16.256
{o1p a a 5} 20.176 13.56 14.91
{p a a 5} P 19.756 13.088 16.256 {o2p a a 5} 20.452 11.905 16.759
{p a a 5} P 19.756 13.088 16.256 {o5* a a 5} 18.176 12.817 16.216
{c5* a a 5} 17.341 13.294 17.289
{c4* a a 5} 15.942 13.614 16.797
{o4* a a 5} 15.788 15.005 16.486
{c4* a a 5} P 15.942 13.614 16.797 {c3* a a 5} 15.339 12.809 15.654
{o3* a a 5} 14.06 12.283 16.021
{c3* a a 5} P 15.339 12.809 15.654 {c2* a a 5} 15.283 13.84 14.513
{o4* a a 5} P 15.788 15.005 16.486 {c1* a a 5} 15.044 15.138 15.261
{c2* a a 5} 15.283 13.84 14.513
@subgroup {DNA b str} dominant    
@balllist {mco} color= red radius= .2
{o3* t b 7} 9.459 27.285 8.772
{o1p t b 8} 10.039 28.973 10.599
{o2p t b 8} 7.726 28.795 9.678
{o5* t b 8} 8.704 26.87 11.073
{o4* t b 8} 9.334 23.734 11.571
{o3* t b 8} 6.601 23.97 13.377
{o1p c b 9} 6.478 25.34 15.501
{o2p c b 9} 4.63 23.755 14.95
{o5* c b 9} 6.86 22.843 15.555
{o4* c b 9} 8.748 20.947 15.863
{o3* c b 9} 6.376 19.852 18.231
@balllist {mcp} color= yellow radius= .3
{p t b 8} 8.977 28.094 10.069
{p c b 9} 6.073 24.053 14.883
@vectorlist {mc} color= white
{o1p t b 8} P 10.039 28.973 10.599 {p t b 8} 8.977 28.094 10.069
{o2p t b 8} 7.726 28.795 9.678
{o3* t b 7}P 9.459 27.285 8.772 {p t b 8} 8.977 28.094 10.069
{o5* t b 8} 8.704 26.87 11.073
{c5* t b 8} 8.263 25.613 10.501
{c4* t b 8} 8.114 24.489 11.504
{o4* t b 8} 9.334 23.734 11.571
{c4* t b 8} P 8.114 24.489 11.504 {c3* t b 8} 7.688 24.807 12.931
{o3* t b 8} 6.601 23.97 13.377
{c3* t b 8} P 7.688 24.807 12.931 {c2* t b 8} 8.974 24.614 13.725
{o4* t b 8} P 9.334 23.734 11.571 {c1* t b 8} 9.633 23.486 12.953
{c2* t b 8} 8.974 24.614 13.725
{o3* t b 8} P 6.601 23.97 13.377 {p c b 9} 6.073 24.053 14.883
{o1p c b 9} 6.478 25.34 15.501
{p c b 9} P 6.073 24.053 14.883 {o2p c b 9} 4.63 23.755 14.95
{p c b 9} P 6.073 24.053 14.883 {o5* c b 9} 6.86 22.843 15.555
{c5* c b 9} 6.638 21.508 15.081
{c4* c b 9} 7.369 20.629 16.056
{o4* c b 9} 8.748 20.947 15.863
{c4* c b 9} P 7.369 20.629 16.056 {c3* c b 9} 7.052 20.936 17.524
{o3* c b 9} 6.376 19.852 18.231
{c3* c b 9} P 7.052 20.936 17.524 {c2* c b 9} 8.382 21.382 18.142
{o4* c b 9} P 8.748 20.947 15.863 {c1* c b 9} 9.425 20.923 17.126
{c2* c b 9} 8.382 21.382 18.142
@subgroup {G-C} dominant    
@balllist {scn g} color= blue radius= .2
{n9 g a 4} 18.653 18.537 16.727
{n7 g a 4} 18.681 20.702 16.066
{n1 g a 4} 15.196 20.359 17.071
{n2 g a 4} 14.078 18.481 17.858
{n3 g a 4} 16.351 18.329 17.322
@balllist {sco} color= red radius= .2
{o6 g a 4} 16.005 22.279 16.257
@vectorlist {G} color= sea
{c1* g a 4} P 19. 17.157 17.12 {n9 g a 4} 18.653 18.537 16.727
{c8 g a 4} 19.399 19.565 16.205
{n7 g a 4} 18.681 20.702 16.066
{c5 g a 4} 17.445 20.357 16.508
{c6 g a 4} 16.234 21.119 16.598
{o6 g a 4} 16.005 22.279 16.257
{c6 g a 4} P 16.234 21.119 16.598 {n1 g a 4} 15.196 20.359 17.071
{c2 g a 4} 15.236 19.043 17.418
{n2 g a 4} 14.078 18.481 17.858
{c2 g a 4} P 15.236 19.043 17.418 {n3 g a 4} 16.351 18.329 17.322
{c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{n9 g a 4} P 18.653 18.537 16.727 {c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{c4 g a 4} 17.398 19.047 16.88
{c5 g a 4} 17.445 20.357 16.508
{c4 g a 4} P 17.398 19.047 16.88 {n3 g a 4} 16.351 18.329 17.322
@vectorlist {scH G} color= gray master= {H}
{n2 g a 4} P 14.078 18.481 17.858 {1hn2 g a 4} 14.059 17.517 18.124
{n2 g a 4} P 14.078 18.481 17.858 {2hn2 g a 4} 13.247 19.034 17.924
{n1 g a 4} P 15.196 20.359 17.071 {hn1 g a 4} 14.319 20.829 17.172
{c8 g a 4} P 19.399 19.565 16.205 {hc8 g a 4} 20.366 19.481 15.964
@balllist {scn c} color= blue radius= .2
{n1 c b 9} 10.609 21.828 16.991
{n3 c b 9} 12.927 22.026 16.78
{n4 c b 9} 13.919 24.099 16.421
@balllist {sco c} color= red radius= .2
{o2 c b 9} 11.937 20.044 17.121
@vectorlist {C} color= yellow
{c1* c b 9} P 9.425 20.923 17.126 {n1 c b 9} 10.609 21.828 16.991
{c2 c b 9} 11.85 21.264 16.979
{o2 c b 9} 11.937 20.044 17.121
{c2 c b 9} P 11.85 21.264 16.979 {n3 c b 9} 12.927 22.026 16.78
{c4 c b 9} 12.803 23.34 16.604
{n4 c b 9} 13.919 24.099 16.421
{c4 c b 9} P 12.803 23.34 16.604 {c5 c b 9} 11.555 23.961 16.609
{c6 c b 9} 10.43 23.166 16.8
{n1 c b 9} 10.609 21.828 16.991
@vectorlist {scH C} color= gray master= {H}
{n4 c b 9} P 13.919 24.099 16.421 {1hn4 c b 9} 13.836 25.087 16.288
{n4 c b 9} P 13.919 24.099 16.421 {2hn4 c b 9} 14.821 23.668 16.415
{c6 c b 9} P 10.43 23.166 16.8 {hc6 c b 9} 9.52 23.581 16.807
{c5 c b 9} P 11.555 23.961 16.609 {hc5 c b 9} 11.447 24.946 16.474
@vectorlist {bp Hb gc} color= purple master= {base-pr Hb}
{o2 c b 9} P U 12.293 19.769 17.339 {h} U 12.891 19.309 17.706
{n3 c b 9} P U 13.298 21.707 16.884 {h} U 13.948 21.147 17.067
{h} P U 15.144 23.289 16.372 {o6 g a 4} U 15.682 22.658 16.3
@subgroup {A-T} dominant    
@balllist {scn t} color= blue radius= .2
{n1 t b 8} 11.118 23.502 13.064
{n3 t b 8} 13.09 22.282 13.338
@balllist {sco t} color= red radius= .2
{o2 t b 8} 11.065 21.322 13.607
{o4 t b 8} 15.086 23.232 13.064
@vectorlist {T} color= sky
{c1* t b 8} P 9.633 23.486 12.953 {n1 t b 8} 11.118 23.502 13.064
{c2 t b 8} 11.725 22.327 13.358
{o2 t b 8} 11.065 21.322 13.607
{c2 t b 8} P 11.725 22.327 13.358 {n3 t b 8} 13.09 22.282 13.338
{c4 t b 8} 13.857 23.378 13.084
{o4 t b 8} 15.086 23.232 13.064
{c4 t b 8} P 13.857 23.378 13.084 {c5 t b 8} 13.22 24.604 12.885
{c5m t b 8} 14.044 25.84 12.702
{n1 t b 8} P 11.118 23.502 13.064 {c6 t b 8} 11.823 24.649 12.845
{c5 t b 8} 13.22 24.604 12.885
@vectorlist {scH t} color= gray master= {H}
{c5m t b 8} P 14.044 25.84 12.702 {1hc5m t b 8} 13.434 26.622 12.573
{c5m t b 8} P 14.044 25.84 12.702 {2hc5m t b 8} 14.628 25.726 11.898
{c5m t b 8} P 14.044 25.84 12.702 {3hc5m t b 8} 14.608 25.979 13.516
{c6 t b 8} P 11.823 24.649 12.845 {hc6 t b 8} 11.359 25.516 12.664
{n3 t b 8} P 13.09 22.282 13.338 {hn3 t b 8} 13.554 21.415 13.519
@balllist {scn a} color= blue radius= .2
{n9 a a 5} 15.652 16.299 14.596
{n7 a a 5} 17.176 17.698 13.694
{n6 a a 5} 16.492 20.664 13.274
{n1 a a 5} 14.359 20.009 13.981
{n3 a a 5} 13.775 17.802 14.724
@vectorlist {A} color= pink
{c1* a a 5} P 15.044 15.138 15.261 {n9 a a 5} 15.652 16.299 14.596
{c8 a a 5} 16.925 16.452 14.133
{n7 a a 5} 17.176 17.698 13.694
{c5 a a 5} 16.014 18.338 13.901
{c6 a a 5} 15.621 19.696 13.698
{n6 a a 5} 16.492 20.664 13.274
{c6 a a 5} P 15.621 19.696 13.698 {n1 a a 5} 14.359 20.009 13.981
{c2 a a 5} 13.524 19.08 14.457
{n3 a a 5} 13.775 17.802 14.724
{c4 a a 5} 15.057 17.508 14.42
{c5 a a 5} 16.014 18.338 13.901
{n9 a a 5} P 15.652 16.299 14.596 {c4 a a 5} 15.057 17.508 14.42
{n3 a a 5} 13.775 17.802 14.724
@vectorlist {scH a} color= gray master= {H}
{c8 a a 5} P 16.925 16.452 14.133 {hc8 a a 5} 17.594 15.709 14.12
{c2 a a 5} P 13.524 19.08 14.457 {hc2 a a 5} 12.587 19.359 14.666
{n6 a a 5} P 16.492 20.664 13.274 {1hn6 a a 5} 16.172 21.603 13.145
{n6 a a 5} P 16.492 20.664 13.274 {2hn6 a a 5} 17.44 20.426 13.062
@vectorlist {bp Hb at} color= purple master= {base-pr Hb}
{h} P U 15.895 22.018 13.125 {o4 t b 8} U 15.363 22.816 13.085
{h} P U 13.793 20.998 13.656 {n1 a a 5} U 14.12 20.426 13.844
@group {2 bp, side} dominant off  
@subgroup {d a} instance= {DNA a str}
@subgroup {d b} instance= {DNA b str}
@subgroup {gc} instance= {G-C}
@subgroup {at} instance= {A-T}
@group {G-C only} dominant nobutton 
@subgroup {d a} instance= {DNA a str}
@subgroup {d b} instance= {DNA b str}
@subgroup {gc} instance= {G-C}
@labellist {H lbl gc} color= white master= {HB labels}  off
{ Hydr.} 11.447 24.946 16.474
@labellist {Do lbl gc} color= bluetint master= {HB labels}  off
{ Donor} 13.836 25.087 16.288
@labellist {Ac lbl gc} color= pinktint master= {HB labels}  off
{ Accept.} 16.005 22.279 16.257
{ Accept.} 18.681 20.702 16.066
@group {A-T only} dominant nobutton  
@subgroup {d a} instance= {DNA a str}
@subgroup {d b} instance= {DNA b str}
@subgroup {at} instance= {A-T}
@labellist {Ac lbl at} color= pinktint master= {HB labels}  off
{ Accept.} P 17.176 17.698 13.694
{ Accept.} P 15.086 23.232 13.064
@labellist {Do lbl at} color= bluetint master= {HB labels}  off
{ Donor} P 17.44 20.426 13.062
@labellist {Me lbl at} color= yellowtint master= {HB labels}  off
{ Methyl} P 14.044 25.84 12.702

@kinemage 2
@caption  (B&T Fig. 7.1, 7.2a)
B DNA - 12-residue duplex, with sugar-phosphate backbone, color-coded bases, and base-pair Hbonds.  Views 3 and 4 look along the major and minor grooves.    (from PDB file 2BNA)
@onewidth 
@viewid {side}
@zoom 1.24
@zslab 160
@center 14.273 20.469 7.688
@matrix
.955085 .163244 -.247311 -.281017 .234139 -.930704 -.094026 .9584 .269497
@2viewid {end}
@2zoom 1.37
@2zslab 210
@2center 14.273 20.469 7.688
@2matrix
-.995085 .047542 -.086864 .058253 .990413 -.125255 .080076 -.1297 -.988315
@3viewid {major groove}
@3zoom 1.24
@3zslab 160
@3center 14.273 20.469 7.688
@3matrix
.956915 .038792 -.287766 -.27123 -.234432 -.933529 -.103675 .971359 -.21381
@4viewid {minor groove}
@4zoom 1.24
@4zslab 180
@4center 14.273 20.469 7.688
@4matrix
.908328 .335653 -.249554 -.41641 .669671 -.614935 -.039286 .662479 .74805
@group {B DNA bb}
@subgroup dominant {sugar-phos}
@vectorlist {mc a} color= white master= {strand a}
{o5* c a 1}P 17.967 33.641 25.114 {c5* c a 1}18.032 32.997 23.823
{c4* c a 1}18.981 31.83 23.93
{o4* c a 1}18.383 30.772 24.709
{c3* c a 1}P 19.356 31.16 22.611 {c2* c a 1}18.234 30.174 22.444
{c1* c a 1}18.333 29.611 23.846
{o4* c a 1}18.383 30.772 24.709
{c4* c a 1}P 18.981 31.83 23.93 {c3* c a 1}19.356 31.16 22.611
{o3* c a 1}20.588 30.488 22.702
{p g a 2}21.586 30.564 21.476
{o1p g a 2}20.812 30.967 20.274
{o2p g a 2}P 22.735 31.405 21.876 {p g a 2}21.586 30.564 21.476
{o5* g a 2}22.068 29.046 21.366
{c5* g a 2}22.339 28.344 22.587
{c4* g a 2}22.457 26.901 22.258
{o4* g a 2}21.231 26.245 22.57
{c3* g a 2}P 22.756 26.584 20.811 {c2* g a 2}21.373 26.3 20.251
{c1* g a 2}20.758 25.561 21.413
{o4* g a 2}21.231 26.245 22.57
{c4* g a 2}P 22.457 26.901 22.258 {c3* g a 2}22.756 26.584 20.811
{o3* g a 2}23.632 25.475 20.714
{p c a 3}24.155 24.981 19.297
{o1p c a 3}23.669 25.875 18.229
{o2p c a 3}P 25.623 24.813 19.359 {p c a 3}24.155 24.981 19.297
{o5* c a 3}23.454 23.553 19.172
{c5* c a 3}23.9 22.466 20.009
{c4* c a 3}22.779 21.457 20.039
{o4* c a 3}21.567 22.184 20.197
{c3* c a 3}P 22.569 20.659 18.763 {c2* c a 3}21.07 20.384 18.773
{c1* c a 3}20.51 21.302 19.846
{o4* c a 3}21.567 22.184 20.197
{c4* c a 3}P 22.779 21.457 20.039 {c3* c a 3}22.569 20.659 18.763
{o3* c a 3}23.36 19.464 18.717
{p g a 4}23.59 18.696 17.329
{o1p g a 4}23.427 19.617 16.175
{o2p g a 4}P 24.895 17.978 17.377 {p g a 4}23.59 18.696 17.329
{o5* g a 4}22.405 17.628 17.363
{c5* g a 4}22.066 16.97 18.609
{c4* g a 4}20.744 16.272 18.416
{o4* g a 4}19.672 17.243 18.381
{c3* g a 4}P 20.623 15.447 17.145 {c2* g a 4}19.954 16.437 16.183
{c1* g a 4}19. 17.157 17.12
{o4* g a 4}19.672 17.243 18.381
{c4* g a 4}P 20.744 16.272 18.416 {c3* g a 4}20.623 15.447 17.145
{o3* g a 4}19.884 14.234 17.37
{p a a 5}19.756 13.088 16.256
{o1p a a 5}20.176 13.56 14.91
{o2p a a 5}P 20.452 11.905 16.759 {p a a 5}19.756 13.088 16.256
{o5* a a 5}18.176 12.817 16.216
{c5* a a 5}17.341 13.294 17.289
{c4* a a 5}15.942 13.614 16.797
{o4* a a 5}15.788 15.005 16.486
{c3* a a 5}P 15.339 12.809 15.654 {c2* a a 5}15.283 13.84 14.513
{c1* a a 5}15.044 15.138 15.261
{o4* a a 5}15.788 15.005 16.486
{c4* a a 5}P 15.942 13.614 16.797 {c3* a a 5}15.339 12.809 15.654
{o3* a a 5}14.06 12.283 16.021
{p a a 6}13.181 11.416 15.009
{o1p a a 6}14.055 10.712 14.039
{o2p a a 6}P 12.241 10.554 15.751 {p a a 6}13.181 11.416 15.009
{o5* a a 6}12.262 12.537 14.356
{c5* a a 6}11.424 13.295 15.238
{c4* a a 6}10.527 14.166 14.418
{o4* a a 6}11.253 15.32 13.975
{c3* a a 6}P 9.884 13.5 13.215 {c2* a a 6}10.591 14.172 12.035
{c1* a a 6}10.987 15.529 12.588
{o4* a a 6}11.253 15.32 13.975
{c4* a a 6}P 10.527 14.166 14.418 {c3* a a 6}9.884 13.5 13.215
{o3* a a 6}8.465 13.658 13.242
{p t a 7}7.569 13.436 11.946
{o1p t a 7}8.106 12.288 11.163
{o2p t a 7}P 6.144 13.377 12.376 {p t a 7}7.569 13.436 11.946
{o5* t a 7}7.747 14.826 11.189
{c5* t a 7}7.197 15.997 11.812
{c4* t a 7}7.427 17.139 10.876
{o4* t a 7}8.818 17.234 10.592
{c3* t a 7}P 6.717 17.003 9.553 {c2* t a 7}7.787 17.366 8.522
{c1* t a 7}8.932 17.926 9.354
{o4* t a 7}8.818 17.234 10.592
{c4* t a 7}P 7.427 17.139 10.876 {c3* t a 7}6.717 17.003 9.553
{o3* t a 7}5.566 17.85 9.517
{p t a 8}4.562 17.847 8.275
{o1p t a 8}4.528 16.517 7.603
{o2p t a 8}P 3.277 18.423 8.718 {p t a 8}4.562 17.847 8.275
{o5* t a 8}5.268 18.927 7.344
{c5* t a 8}5.675 20.177 7.93
{c4* t a 8}6.381 20.91 6.851
{o4* t a 8}7.689 20.368 6.697
{c3* t a 8}P 5.703 20.937 5.483 {c2* t a 8}6.722 20.23 4.571
{c1* t a 8}8.036 20.436 5.311
{o4* t a 8}7.689 20.368 6.697
{c4* t a 8}P 6.381 20.91 6.851 {c3* t a 8}5.703 20.937 5.483
{o3* t a 8}5.381 22.299 5.108
{p c a 9}4.902 22.735 3.648
{o1p c a 9}4.239 21.614 2.932
{o2p c a 9}P 4.084 23.963 3.795 {p c a 9}4.902 22.735 3.648
{o5* c a 9}6.294 23.116 2.956
{c5* c a 9}7.017 24.267 3.43
{c4* c a 9}8.27 24.355 2.631
{o4* c a 9}8.985 23.112 2.765
{c4* c a 9}P 8.27 24.355 2.631 {c3* c a 9}8.084 24.598 1.135
{o3* c a 9}9.016 25.579 0.65
{c3* c a 9}P 8.084 24.598 1.135 {c2* c a 9}8.342 23.205 0.556
{o4* c a 9}P 8.985 23.112 2.765 {c1* c a 9}9.486 22.794 1.461
{c2* c a 9}P 8.342 23.205 0.556 {c1* c a 9}9.486 22.794 1.461
{c1* c a 9}P 9.486 22.794 1.461 {c2* c a 9}8.342 23.205 0.556
{o3* c a 9}P 9.016 25.579 0.65 {p g a 10}8.564 26.823 -0.247
{o1p g a 10}7.136 26.755 -0.641
{p g a 10}P 8.564 26.823 -0.247 {o2p g a 10}8.928 28.055 0.488
{p g a 10}P 8.564 26.823 -0.247 {o5* g a 10}9.491 26.623 -1.546
{c5* g a 10}10.88 26.225 -1.41
{c4* g a 10}11.236 25.287 -2.542
{o4* g a 10}10.883 23.94 -2.181
{c4* g a 10}P 11.236 25.287 -2.542 {c3* g a 10}10.59 25.524 -3.91
{o3* g a 10}11.571 25.54 -4.967
{c3* g a 10}P 10.59 25.524 -3.91 {c2* g a 10}9.571 24.384 -4.041
{o4* g a 10}P 10.883 23.94 -2.181 {c1* g a 10}10.431 23.33 -3.391
{c2* g a 10}P 9.571 24.384 -4.041 {c1* g a 10}10.431 23.33 -3.391
{c1* g a 10}P 10.431 23.33 -3.391 {c2* g a 10}9.571 24.384 -4.041
{o3* g a 10}P 11.571 25.54 -4.967 {p c a 11}12.043 26.957 -5.557
{o1p c a 11}11.298 27.207 -6.824
{p c a 11}P 12.043 26.957 -5.557 {o2p c a 11}11.881 27.995 -4.497
{p c a 11}P 12.043 26.957 -5.557 {o5* c a 11}13.595 26.728 -5.884
{c5* c a 11}14.553 26.525 -4.824
{c4* c a 11}15.436 25.339 -5.168
{o4* c a 11}14.683 24.116 -4.965
{c4* c a 11}P 15.436 25.339 -5.168 {c3* c a 11}15.97 25.269 -6.593
{o3* c a 11}17.348 24.873 -6.653
{c3* c a 11}P 15.97 25.269 -6.593 {c2* c a 11}15.028 24.241 -7.235
{o4* c a 11}P 14.683 24.116 -4.965 {c1* c a 11}14.873 23.255 -6.099
{c2* c a 11}P 15.028 24.241 -7.235 {c1* c a 11}14.873 23.255 -6.099
{c1* c a 11}P 14.873 23.255 -6.099 {c2* c a 11}15.028 24.241 -7.235
{o3* c a 11}P 17.348 24.873 -6.653 {p g a 12}18.272 25.359 -7.869
{o1p g a 12}17.616 26.502 -8.555
{p g a 12}P 18.272 25.359 -7.869 {o2p g a 12}19.673 25.581 -7.438
{p g a 12}P 18.272 25.359 -7.869 {o5* g a 12}18.28 24.093 -8.836
{c5* g a 12}19.318 23.115 -8.697
{c4* g a 12}18.835 21.939 -9.474
{o4* g a 12}17.477 21.703 -9.097
{c4* g a 12}P 18.835 21.939 -9.474 {c3* g a 12}18.807 22.137 -10.971
{o3* g a 12}19.853 21.408 -11.637
{c3* g a 12}P 18.807 22.137 -10.971 {c2* g a 12}17.39 21.71 -11.384
{o4* g a 12}P 17.477 21.703 -9.097 {c1* g a 12}16.903 20.964 -10.156
{c2* g a 12}P 17.39 21.71 -11.384 {c1* g a 12}16.903 20.964 -10.156
{c1* g a 12}P 16.903 20.964 -10.156 {c2* g a 12}17.39 21.71 -11.384
@vectorlist {mc b} color= yellowtint master= {strand b}
{o5* c b 1}P 6.53 11.893 -8.949 {o5* c b 1}6.53 11.893 -8.949
{c5* c b 1}7.172 10.715 -9.471
{c4* c b 1}8.641 10.805 -9.141
{o4* c b 1}9.174 12.019 -9.707
{c4* c b 1}P 8.641 10.805 -9.141 {c3* c b 1}9.001 10.814 -7.661
{o3* c b 1}10.225 10.118 -7.38
{c3* c b 1}P 9.001 10.814 -7.661 {c2* c b 1}9.104 12.307 -7.376
{o4* c b 1}P 9.174 12.019 -9.707 {c1* c b 1}9.789 12.786 -8.651
{c2* c b 1}P 9.104 12.307 -7.376 {c1* c b 1}9.789 12.786 -8.651
{c1* c b 1}P 9.789 12.786 -8.651 {c2* c b 1}9.104 12.307 -7.376
{o3* c b 1}P 10.225 10.118 -7.38 {p g b 2}10.397 9.296 -6.018
{o1p g b 2}9.774 10.051 -4.914
{p g b 2}P 10.397 9.296 -6.018 {o2p g b 2}9.877 7.916 -6.25
{p g b 2}P 10.397 9.296 -6.018 {o5* g b 2}11.993 9.249 -5.819
{c5* g b 2}12.867 9.452 -6.957
{c4* g b 2}13.966 10.396 -6.552
{o4* g b 2}13.606 11.749 -6.844
{c4* g b 2}P 13.966 10.396 -6.552 {c3* g b 2}14.315 10.328 -5.087
{o3* g b 2}15.671 9.985 -4.864
{c3* g b 2}P 14.315 10.328 -5.087 {c2* g b 2}13.969 11.708 -4.553
{o4* g b 2}P 13.606 11.749 -6.844 {c1* g b 2}14.062 12.592 -5.781
{c2* g b 2}P 13.969 11.708 -4.553 {c1* g b 2}14.062 12.592 -5.781
{c1* g b 2}P 14.062 12.592 -5.781 {c2* g b 2}13.969 11.708 -4.553
{o3* g b 2}P 15.671 9.985 -4.864 {p c b 3}16.127 9.685 -3.372
{o1p c b 3}14.892 9.465 -2.585
{p c b 3}P 16.127 9.685 -3.372 {o2p c b 3}17.128 8.57 -3.382
{p c b 3}P 16.127 9.685 -3.372 {o5* c b 3}16.811 11.058 -2.932
{c5* c b 3}17.854 11.627 -3.736
{c4* c b 3}17.745 13.101 -3.494
{o4* c b 3}16.367 13.447 -3.519
{c4* c b 3}P 17.745 13.101 -3.494 {c3* c b 3}18.135 13.516 -2.1
{o3* c b 3}19.54 13.621 -1.933
{c3* c b 3}P 18.135 13.516 -2.1 {c2* c b 3}17.375 14.827 -1.901
{o4* c b 3}P 16.367 13.447 -3.519 {c1* c b 3}16.289 14.766 -2.972
{c2* c b 3}P 17.375 14.827 -1.901 {c1* c b 3}16.289 14.766 -2.972
{c1* c b 3}P 16.289 14.766 -2.972 {c2* c b 3}17.375 14.827 -1.901
{o3* c b 3}P 19.54 13.621 -1.933 {p g b 4}20.152 13.723 -0.469
{o1p g b 4}19.263 13.024 0.493
{p g b 4}P 20.152 13.723 -0.469 {o2p g b 4}21.563 13.284 -0.485
{p g b 4}P 20.152 13.723 -0.469 {o5* g b 4}20.158 15.301 -0.281
{c5* g b 4}21.131 16.073 -0.995
{c4* g b 4}20.738 17.486 -0.771
{o4* g b 4}19.312 17.507 -0.808
{c4* g b 4}P 20.738 17.486 -0.771 {c3* g b 4}21.171 18.086 0.557
{o3* g b 4}21.695 19.407 0.389
{c3* g b 4}P 21.171 18.086 0.557 {c2* g b 4}19.898 18.021 1.393
{o4* g b 4}P 19.312 17.507 -0.808 {c1* g b 4}18.828 18.206 0.333
{c2* g b 4}P 19.898 18.021 1.393 {c1* g b 4}18.828 18.206 0.333
{c1* g b 4}P 18.828 18.206 0.333 {c2* g b 4}19.898 18.021 1.393
{o3* g b 4}P 21.695 19.407 0.389 {p a b 5}22.144 20.317 1.624
{o1p a b 5}22.189 19.493 2.847
{p a b 5}P 22.144 20.317 1.624 {o2p a b 5}23.41 21.028 1.289
{p a b 5}P 22.144 20.317 1.624 {o5* a b 5}20.936 21.375 1.679
{c5* a b 5}20.226 21.741 0.471
{c4* a b 5}19.257 22.885 0.706
{o4* a b 5}17.953 22.36 0.954
{c4* a b 5}P 19.257 22.885 0.706 {c3* a b 5}19.548 23.891 1.808
{o3* a b 5}19.147 25.236 1.479
{c3* a b 5}P 19.548 23.891 1.808 {c2* a b 5}18.772 23.306 2.978
{o4* a b 5}P 17.953 22.36 0.954 {c1* a b 5}17.586 22.642 2.302
{c2* a b 5}P 18.772 23.306 2.978 {c1* a b 5}17.586 22.642 2.302
{c1* a b 5}P 17.586 22.642 2.302 {c2* a b 5}18.772 23.306 2.978
{o3* a b 5}P 19.147 25.236 1.479 {p a b 6}19.209 26.382 2.595
{o1p a b 6}20.198 25.95 3.596
{p a b 6}P 19.209 26.382 2.595 {o2p a b 6}19.422 27.726 2.001
{p a b 6}P 19.209 26.382 2.595 {o5* a b 6}17.753 26.335 3.238
{c5* a b 6}16.602 26.133 2.407
{c4* a b 6}15.379 26.238 3.289
{o4* a b 6}14.983 24.929 3.736
{c4* a b 6}P 15.379 26.238 3.289 {c3* a b 6}15.432 27.169 4.502
{o3* a b 6}14.264 28. 4.562
{c3* a b 6}P 15.432 27.169 4.502 {c2* a b 6}15.554 26.191 5.659
{o4* a b 6}P 14.983 24.929 3.736 {c1* a b 6}14.764 24.99 5.146
{c2* a b 6}P 15.554 26.191 5.659 {c1* a b 6}14.764 24.99 5.146
{c1* a b 6}P 14.764 24.99 5.146 {c2* a b 6}15.554 26.191 5.659
{o3* a b 6}P 14.264 28. 4.562 {p t b 7}13.87 28.886 5.838
{o1p t b 7}15.047 29.241 6.66
{p t b 7}P 13.87 28.886 5.838 {o2p t b 7}13.054 30.03 5.354
{p t b 7}P 13.87 28.886 5.838 {o5* t b 7}12.921 27.902 6.662
{c5* t b 7}11.734 27.355 6.055
{c4* t b 7}11.072 26.504 7.097
{o4* t b 7}11.903 25.358 7.379
{c4* t b 7}P 11.072 26.504 7.097 {c3* t b 7}10.847 27.204 8.427
{o3* t b 7}9.459 27.285 8.772
{c3* t b 7}P 10.847 27.204 8.427 {c2* t b 7}11.671 26.388 9.425
{o4* t b 7}P 11.903 25.358 7.379 {c1* t b 7}11.717 25.027 8.762
{c2* t b 7}P 11.671 26.388 9.425 {c1* t b 7}11.717 25.027 8.762
{c1* t b 7}P 11.717 25.027 8.762 {c2* t b 7}11.671 26.388 9.425
{o3* t b 7}P 9.459 27.285 8.772 {p t b 8}8.977 28.094 10.069
{o1p t b 8}10.039 28.973 10.599
{p t b 8}P 8.977 28.094 10.069 {o2p t b 8}7.726 28.795 9.678
{p t b 8}P 8.977 28.094 10.069 {o5* t b 8}8.704 26.87 11.073
{c5* t b 8}8.263 25.613 10.501
{c4* t b 8}8.114 24.489 11.504
{o4* t b 8}9.334 23.734 11.571
{c4* t b 8}P 8.114 24.489 11.504 {c3* t b 8}7.688 24.807 12.931
{o3* t b 8}6.601 23.97 13.377
{c3* t b 8}P 7.688 24.807 12.931 {c2* t b 8}8.974 24.614 13.725
{o4* t b 8}P 9.334 23.734 11.571 {c1* t b 8}9.633 23.486 12.953
{c2* t b 8}P 8.974 24.614 13.725 {c1* t b 8}9.633 23.486 12.953
{c1* t b 8}P 9.633 23.486 12.953 {c2* t b 8}8.974 24.614 13.725
{o3* t b 8}P 6.601 23.97 13.377 {p c b 9}6.073 24.053 14.883
{o1p c b 9}6.478 25.34 15.501
{p c b 9}P 6.073 24.053 14.883 {o2p c b 9}4.63 23.755 14.95
{p c b 9}P 6.073 24.053 14.883 {o5* c b 9}6.86 22.843 15.555
{c5* c b 9}6.638 21.508 15.081
{c4* c b 9}7.369 20.629 16.056
{o4* c b 9}8.748 20.947 15.863
{c4* c b 9}P 7.369 20.629 16.056 {c3* c b 9}7.052 20.936 17.524
{o3* c b 9}6.376 19.852 18.231
{c3* c b 9}P 7.052 20.936 17.524 {c2* c b 9}8.382 21.382 18.142
{o4* c b 9}P 8.748 20.947 15.863 {c1* c b 9}9.425 20.923 17.126
{c2* c b 9}P 8.382 21.382 18.142 {c1* c b 9}9.425 20.923 17.126
{c1* c b 9}P 9.425 20.923 17.126 {c2* c b 9}8.382 21.382 18.142
{o3* c b 9}P 6.376 19.852 18.231 {p g b 10}5.826 20.045 19.739
{o1p g b 10}5.458 21.483 19.98
{p g b 10}P 5.826 20.045 19.739 {o2p g b 10}4.815 19.009 20.06
{p g b 10}P 5.826 20.045 19.739 {o5* g b 10}7.109 19.699 20.615
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{o6 g b 2}P U 10.772 18.263 -5.706 {n4 c a 11}U 10.56 19.389 -6.402
{n3 c a 11}P U 12.815 19.6 -6.165 {n1 g b 2}U 13.016 18.273 -5.852
{o2 c a 11}P U 15.03 19.902 -5.957 {n2 g b 2}U 15.292 18.468 -5.995
{o2 c b 3}P U 14.663 17.738 -2.931 {n2 g a 10}U 14.151 19.011 -3.1
{n1 g a 10}P U 12.151 18.106 -2.36 {n3 c b 3}U 12.739 16.847 -2.146
{n4 c a 9}P U 11.232 17.232 1.285 {o6 g b 4}U 12.475 16.937 1.377
{n1 g b 4}P U 13.175 18.95 0.656 {n3 c a 9}U 11.882 19.384 0.835
{o2 c a 9}P U 12.407 21.541 0.381 {n2 g b 4}U 13.69 21.083 -0.049
{n6 a b 5}P U 14.125 17.541 4.577 {o4 t a 8}U 12.587 16.955 4.486
{n3 t a 8}P U 11.909 19.066 4.379 {n1 a b 5}U 13.094 19.505 4.056
{n6 a b 6}P U 15.246 18.83 7.377 {o4 t a 7}U 14.294 17.274 7.52
{n1 a b 6}P U 13.219 19.851 7.255 {n3 t a 7}U 12.647 18.769 7.732
{o4 t b 7}P U 15.967 21.317 10.069 {n6 a a 6}U 15.69 19.49 10.246
{n3 t b 7}P U 13.782 21.552 10.067 {n1 a a 6}U 13.579 20.288 10.575
{n6 a a 5}P U 16.157 21.276 13.224 {o4 t b 8}U 15.421 22.62 13.114
{n1 a a 5}P U 14.028 20.602 13.813 {n3 t b 8}U 13.421 21.689 13.506
{n4 c b 9}P U 14.446 23.64 16.38 {o6 g a 4}U 15.478 22.738 16.298
{n1 g a 4}P U 14.635 20.771 16.999 {n3 c b 9}U 13.488 21.614 16.852
{o2 c b 9}P U 12.482 19.646 17.309 {n2 g a 4}U 13.533 18.879 17.67
{o6 g b 10}P U 14.711 24.453 19.117 {n4 c a 3}U 15.886 24.66 18.589
{n3 c a 3}P U 16.527 22.623 19.492 {n1 g b 10}U 15.252 22.386 19.923
{n2 g b 10}P U 16.017 20.323 20.654 {o2 c a 3}U 17.241 20.645 20.353
{o6 g a 2}P U 14.343 24.883 22.654 {n4 c b 11}U 13.438 24.401 23.335
{n1 g a 2}P U 15.829 23.23 23.153 {n3 c b 11}U 14.726 22.543 23.826
{o2 c b 11}P U 15.916 20.682 24.316 {n2 g a 2}U 17.188 21.46 23.77
{o2 c a 1}P U 18.403 26.682 25.291 {n2 g b 12}U 18.36 25.215 25.655
{n1 g b 12}P U 16.11 25.179 26.155 {n3 c a 1}U 16.167 26.362 25.475
{o6 g b 12}P U 13.898 25.27 26.587 {n4 c a 1}U 13.886 26.166 25.591
{n4 c b 3}P U 10.807 15.881 -1.297 {o6 g a 10}U 10.293 17.048 -1.55
@group {labels} dominant
@labellist {Drawn} color= gray     
{Major groove} 15.94 17.595 8.435
{Minor} 4.615 23.918 8.838

@kinemage 3
@caption  (B&T Fig. 7.2b)
A form DNA duplex, with base-pair Hbonds and color-coded bases.  Sugar-phosphate backbone shown in white (strand a) or yellowtint (strand b);  bases color-coded as G seagreen, C yellow, A pink, and U skyblue;  base-pair Hbonds in gray.  (from PDB file 3ANA)
@onewidth 
@viewid {side}
@zoom 1.0
@zslab 160
@center -10.118 18.165 .376
@matrix
.54922 .79014 -.2721 .65967 -.21003 .72161 .51302 -.57582 -.63658
@2viewid {end}
@2zoom 1.0
@2zslab 160
@2center -10.118 18.165 .376
@2matrix
.68611 .03344 .72673 .61462 -.5611 -.55444 .38923 .82707 -.40553
@3viewid {major groove}
@3zoom 1.00 
@3zslab 160 
@3center -10.118 18.165 0.376 
@3matrix 
 0.55490  0.55291 -0.62159  0.47902  0.39853  0.78212  0.68016 -0.73176 -0.04371
@4viewid {minor groove}
@4zoom 1.00 
@4zslab 160 
@4center -10.118 18.165 0.376 
@4matrix 
 0.62489  0.65785  0.42041  0.36559 -0.72238  0.58695  0.68982 -0.21308 -0.69191
@group {A DNA} 
@subgroup dominant {sugar-phos} 
@vectorlist {mc} color= white master= {strand a}
{o5* g a 1}P 4.03 21.418 3.524 {c5* g a 1}2.885 21.689 2.669
{c4* g a 1}3.463 22.61 1.611
{o4* g a 1}4.201 21.868 0.698
{c4* g a 1}P 3.463 22.61 1.611 {c3* g a 1}2.391 23.283 0.792
{o3* g a 1}2.065 24.52 1.441
{c3* g a 1}P 2.391 23.283 0.792 {c2* g a 1}2.981 23.364 -0.605
{o4* g a 1}P 4.201 21.868 0.698 {c1* g a 1}3.742 22.062 -0.654
{c2* g a 1}P 2.981 23.364 -0.605 {c1* g a 1}3.742 22.062 -0.654
{c1* g a 1}P 3.742 22.062 -0.654 {c2* g a 1}2.981 23.364 -0.605
{o3* g a 1}P 2.065 24.52 1.441 {p g a 2}0.48 24.8 1.264
{o1p g a 2}0.089 23.482 1.811
{p g a 2}P 0.48 24.8 1.264 {o2p g a 2}-0.129 26. 1.815
{p g a 2}P 0.48 24.8 1.264 {o5* g a 2}0.522 25.068 -0.311
{c5* g a 2}0.534 26.467 -0.685
{c4* g a 2}0.262 26.434 -2.176
{o4* g a 2}0.899 25.347 -2.798
{c4* g a 2}P 0.262 26.434 -2.176 {c3* g a 2}-1.22 26.252 -2.483
{o3* g a 2}-1.943 27.513 -2.496
{c3* g a 2}P -1.22 26.252 -2.483 {c2* g a 2}-1.211 25.554 -3.835
{o4* g a 2}P 0.899 25.347 -2.798 {c1* g a 2}0.049 24.711 -3.751
{c2* g a 2}P -1.211 25.554 -3.835 {c1* g a 2}0.049 24.711 -3.751
{c1* g a 2}P 0.049 24.711 -3.751 {c2* g a 2}-1.211 25.554 -3.835
{o3* g a 2}P -1.943 27.513 -2.496 {p g a 3}-3.421 27.347 -1.913
{o1p g a 3}-3.269 26.337 -0.765
{p g a 3}P -3.421 27.347 -1.913 {o2p g a 3}-3.87 28.677 -1.49
{p g a 3}P -3.421 27.347 -1.913 {o5* g a 3}-4.191 26.645 -3.128
{c5* g a 3}-4.32 27.371 -4.364
{c4* g a 3}-4.877 26.357 -5.334
{o4* g a 3}-4.063 25.206 -5.388
{c4* g a 3}P -4.877 26.357 -5.334 {c3* g a 3}-6.219 25.737 -4.961
{o3* g a 3}-7.284 26.649 -5.018
{c3* g a 3}P -6.219 25.737 -4.961 {c2* g a 3}-6.259 24.67 -6.064
{o4* g a 3}P -4.063 25.206 -5.388 {c1* g a 3}-4.873 24.127 -5.886
{c2* g a 3}P -6.259 24.67 -6.064 {c1* g a 3}-4.873 24.127 -5.886
{c1* g a 3}P -4.873 24.127 -5.886 {c2* g a 3}-6.259 24.67 -6.064
{o3* g a 3}P -7.284 26.649 -5.018 {p a a 4}-8.874 26.378 -4.752
{o1p a a 4}-8.849 26.301 -3.261
{p a a 4}P -8.874 26.378 -4.752 {o2p a a 4}-9.354 27.696 -5.374
{p a a 4}P -8.874 26.378 -4.752 {o5* a a 4}-9.333 25.283 -5.708
{c5* a a 4}-9.694 25.364 -7.105
{c4* a a 4}-10.586 24.175 -7.345
{o4* a a 4}-9.888 22.967 -7.185
{c4* a a 4}P -10.586 24.175 -7.345 {c3* a a 4}-11.7 24.021 -6.309
{o3* a a 4}-12.656 25.043 -6.464
{c3* a a 4}P -11.7 24.021 -6.309 {c2* a a 4}-12.138 22.582 -6.625
{o4* a a 4}P -9.888 22.967 -7.185 {c1* a a 4}-10.778 21.937 -6.687
{c2* a a 4}P -12.138 22.582 -6.625 {c1* a a 4}-10.778 21.937 -6.687
{c1* a a 4}P -10.778 21.937 -6.687 {c2* a a 4}-12.138 22.582 -6.625
{o3* a a 4}P -12.656 25.043 -6.464 {p t a 5}-14.101 25.177 -5.77
{o1p t a 5}-13.656 25.98 -4.614
{p t a 5}P -14.101 25.177 -5.77 {o2p t a 5}-14.756 25.753 -7.007
{p t a 5}P -14.101 25.177 -5.77 {o5* t a 5}-14.716 23.77 -5.414
{c5* t a 5}-15.625 23.316 -6.469
{c4* t a 5}-16.203 21.989 -5.984
{o4* t a 5}-15.114 21.174 -5.664
{c4* t a 5}P -16.203 21.989 -5.984 {c3* t a 5}-17.018 22.103 -4.716
{o3* t a 5}-18.437 22.314 -4.889
{c3* t a 5}P -17.018 22.103 -4.716 {c2* t a 5}-16.735 20.769 -4.017
{o4* t a 5}P -15.114 21.174 -5.664 {c1* t a 5}-15.379 20.367 -4.525
{c2* t a 5}P -16.735 20.769 -4.017 {c1* t a 5}-15.379 20.367 -4.525
{c1* t a 5}P -15.379 20.367 -4.525 {c2* t a 5}-16.735 20.769 -4.017
{o3* t a 5}P -18.437 22.314 -4.889 {p c a 6}-19.327 22.695 -3.648
{o1p c a 6}-18.599 23.819 -3.052
{p c a 6}P -19.327 22.695 -3.648 {o2p c a 6}-20.753 22.878 -4.12
{p c a 6}P -19.327 22.695 -3.648 {o5* c a 6}-19.507 21.572 -2.469
{c5* c a 6}-20.387 20.525 -2.91
{c4* c a 6}-20.118 19.264 -2.131
{o4* c a 6}-18.784 18.81 -2.184
{c4* c a 6}P -20.118 19.264 -2.131 {c3* c a 6}-20.376 19.459 -0.641
{o3* c a 6}-21.776 19.589 -0.445
{c3* c a 6}P -20.376 19.459 -0.641 {c2* c a 6}-19.718 18.206 -0.098
{o4* c a 6}P -18.784 18.81 -2.184 {c1* c a 6}-18.465 18.153 -0.943
{c2* c a 6}P -19.718 18.206 -0.098 {c1* c a 6}-18.465 18.153 -0.943
{c1* c a 6}P -18.465 18.153 -0.943 {c2* c a 6}-19.718 18.206 -0.098
{o3* c a 6}P -21.776 19.589 -0.445 {p c a 7}-22.286 19.84 1.037
{o1p c a 7}-21.863 21.215 1.344
{p c a 7}P -22.286 19.84 1.037 {o2p c a 7}-23.738 19.491 0.952
{p c a 7}P -22.286 19.84 1.037 {o5* c a 7}-21.448 18.923 1.953
{c5* c a 7}-22.413 18.145 2.692
{c4* c a 7}-21.57 17.261 3.573
{o4* c a 7}-20.226 17.269 3.203
{c4* c a 7}P -21.57 17.261 3.573 {c3* c a 7}-21.61 17.8 4.983
{o3* c a 7}-22.806 17.35 5.628
{c3* c a 7}P -21.61 17.8 4.983 {c2* c a 7}-20.366 17.212 5.583
{o4* c a 7}P -20.226 17.269 3.203 {c1* c a 7}-19.46 17.151 4.396
{c2* c a 7}P -20.366 17.212 5.583 {c1* c a 7}-19.46 17.151 4.396
{c1* c a 7}P -19.46 17.151 4.396 {c2* c a 7}-20.366 17.212 5.583
{o3* c a 7}P -22.806 17.35 5.628 {p c a 8}-23.242 18.404 6.794
{o1p c a 8}-23.331 19.678 6.117
{p c a 8}P -23.242 18.404 6.794 {o2p c a 8}-24.436 17.723 7.314
{p c a 8}P -23.242 18.404 6.794 {o5* c a 8}-22.041 18.197 7.808
{c5* c a 8}-22.429 17.167 8.76
{c4* c a 8}-21.294 17.082 9.748
{o4* c a 8}-20.104 17.374 9.08
{c4* c a 8}P -21.294 17.082 9.748 {c3* c a 8}-21.343 18.108 10.856
{o3* c a 8}-22.186 17.622 11.897
{c3* c a 8}P -21.343 18.108 10.856 {c2* c a 8}-19.886 18.254 11.274
{o4* c a 8}P -20.104 17.374 9.08 {c1* c a 8}-19.179 17.832 10.028
{c2* c a 8}P -19.886 18.254 11.274 {c1* c a 8}-19.179 17.832 10.028
{c1* c a 8}P -19.179 17.832 10.028 {c2* c a 8}-19.886 18.254 11.274
@vectorlist {mc} color= yellowtint master= {strand b}
{o5* g b 9}P -8.38 25.303 13.485 {c5* g b 9}-8.312 24.869 14.855
{c4* g b 9}-8.905 23.478 15.02
{o4* g b 9}-10.312 23.628 15.153
{c4* g b 9}P -8.905 23.478 15.02 {c3* g b 9}-8.722 22.472 13.899
{o3* g b 9}-7.458 21.783 13.85
{c3* g b 9}P -8.722 22.472 13.899 {c2* g b 9}-9.893 21.523 14.223
{o4* g b 9}P -10.312 23.628 15.153 {c1* g b 9}-10.984 22.529 14.513
{c2* g b 9}P -9.893 21.523 14.223 {c1* g b 9}-10.984 22.529 14.513
{c1* g b 9}P -10.984 22.529 14.513 {c2* g b 9}-9.893 21.523 14.223
{o3* g b 9}P -7.458 21.783 13.85 {p g b 10}-7.158 20.533 12.889
{o1p g b 10}-7.121 21.109 11.478
{p g b 10}P -7.158 20.533 12.889 {o2p g b 10}-5.847 19.868 13.196
{p g b 10}P -7.158 20.533 12.889 {o5* g b 10}-8.291 19.455 12.996
{c5* g b 10}-8.261 18.542 11.861
{c4* g b 10}-9.511 17.715 12.035
{o4* g b 10}-10.591 18.579 12.288
{c4* g b 10}P -9.511 17.715 12.035 {c3* g b 10}-9.883 16.883 10.82
{o3* g b 10}-9.179 15.638 10.842
{c3* g b 10}P -9.883 16.883 10.82 {c2* g b 10}-11.403 16.742 10.945
{o4* g b 10}P -10.591 18.579 12.288 {c1* g b 10}-11.691 18.116 11.505
{c2* g b 10}P -11.403 16.742 10.945 {c1* g b 10}-11.691 18.116 11.505
{c1* g b 10}P -11.691 18.116 11.505 {c2* g b 10}-11.403 16.742 10.945
{o3* g b 10}P -9.179 15.638 10.842 {p g b 11}-8.387 15.29 9.405
{o1p g b 11}-7.931 16.527 8.934
{p g b 11}P -8.387 15.29 9.405 {o2p g b 11}-7.549 14.113 9.89
{p g b 11}P -8.387 15.29 9.405 {o5* g b 11}-9.645 14.612 8.684
{c5* g b 11}-10.171 13.481 9.467
{c4* g b 11}-11.398 13.205 8.622
{o4* g b 11}-12.173 14.377 8.573
{c4* g b 11}P -11.398 13.205 8.622 {c3* g b 11}-11.08 12.962 7.163
{o3* g b 11}-10.539 11.692 6.905
{c3* g b 11}P -11.08 12.962 7.163 {c2* g b 11}-12.478 13.104 6.593
{o4* g b 11}P -12.173 14.377 8.573 {c1* g b 11}-12.937 14.312 7.359
{c2* g b 11}P -12.478 13.104 6.593 {c1* g b 11}-12.937 14.312 7.359
{c1* g b 11}P -12.937 14.312 7.359 {c2* g b 11}-12.478 13.104 6.593
{o3* g b 11}P -10.539 11.692 6.905 {p a b 12}-9.841 11.287 5.508
{o1p a b 12}-8.809 12.321 5.303
{p a b 12}P -9.841 11.287 5.508 {o2p a b 12}-9.303 9.908 5.775
{p a b 12}P -9.841 11.287 5.508 {o5* a b 12}-11.096 11.303 4.547
{c5* a b 12}-11.921 10.192 4.2
{c4* a b 12}-12.693 10.565 2.959
{o4* a b 12}-13.333 11.81 3.15
{c4* a b 12}P -12.693 10.565 2.959 {c3* a b 12}-11.878 10.784 1.7
{o3* a b 12}-11.609 9.571 1.023
{c3* a b 12}P -11.878 10.784 1.7 {c2* a b 12}-12.773 11.676 0.845
{o4* a b 12}P -13.333 11.81 3.15 {c1* a b 12}-13.403 12.524 1.922
{c2* a b 12}P -12.773 11.676 0.845 {c1* a b 12}-13.403 12.524 1.922
{c1* a b 12}P -13.403 12.524 1.922 {c2* a b 12}-12.773 11.676 0.845
{o3* a b 12}P -11.609 9.571 1.023 {p t b 13}-10.321 9.101 0.36
{o1p t b 13}-9.153 9.956 0.85
{p t b 13}P -10.321 9.101 0.36 {o2p t b 13}-10.061 7.653 0.405
{p t b 13}P -10.321 9.101 0.36 {o5* t b 13}-10.567 9.543 -1.166
{c5* t b 13}-11.616 8.983 -2.006
{c4* t b 13}-11.97 10.131 -2.932
{o4* t b 13}-12.314 11.238 -2.136
{c4* t b 13}P -11.97 10.131 -2.932 {c3* t b 13}-10.829 10.719 -3.751
{o3* t b 13}-10.41 9.871 -4.796
{c3* t b 13}P -10.829 10.719 -3.751 {c2* t b 13}-11.506 11.996 -4.231
{o4* t b 13}P -12.314 11.238 -2.136 {c1* t b 13}-12.211 12.406 -2.959
{c2* t b 13}P -11.506 11.996 -4.231 {c1* t b 13}-12.211 12.406 -2.959
{c1* t b 13}P -12.211 12.406 -2.959 {c2* t b 13}-11.506 11.996 -4.231
{o3* t b 13}P -10.41 9.871 -4.796 {p c b 14}-9.057 9.985 -5.53
{o1p c b 14}-7.945 10.159 -4.569
{p c b 14}P -9.057 9.985 -5.53 {o2p c b 14}-8.706 8.784 -6.295
{p c b 14}P -9.057 9.985 -5.53 {o5* c b 14}-9.24 11.339 -6.335
{c5* c b 14}-9.951 11.315 -7.586
{c4* c b 14}-9.858 12.726 -8.115
{o4* c b 14}-10.356 13.623 -7.154
{c4* c b 14}P -9.858 12.726 -8.115 {c3* c b 14}-8.436 13.25 -8.369
{o3* c b 14}-7.837 12.658 -9.499
{c3* c b 14}P -8.436 13.25 -8.369 {c2* c b 14}-8.729 14.738 -8.524
{o4* c b 14}P -10.356 13.623 -7.154 {c1* c b 14}-9.703 14.876 -7.376
{c2* c b 14}P -8.729 14.738 -8.524 {c1* c b 14}-9.703 14.876 -7.376
{c1* c b 14}P -9.703 14.876 -7.376 {c2* c b 14}-8.729 14.738 -8.524
{o3* c b 14}P -7.837 12.658 -9.499 {p c b 15}-6.465 12.852 -10.197
{o1p c b 15}-5.484 12.402 -9.138
{p c b 15}P -6.465 12.852 -10.197 {o2p c b 15}-6.481 12.069 -11.425
{p c b 15}P -6.465 12.852 -10.197 {o5* c b 15}-6.474 14.418 -10.357
{c5* c b 15}-6.549 15.002 -11.67
{c4* c b 15}-6.027 16.409 -11.505
{o4* c b 15}-6.432 17.029 -10.317
{c4* c b 15}P -6.027 16.409 -11.505 {c3* c b 15}-4.496 16.466 -11.398
{o3* c b 15}-4.018 16.052 -12.666
{c3* c b 15}P -4.496 16.466 -11.398 {c2* c b 15}-4.306 17.897 -10.931
{o4* c b 15}P -6.432 17.029 -10.317 {c1* c b 15}-5.453 18.011 -9.948
{c2* c b 15}P -4.306 17.897 -10.931 {c1* c b 15}-5.453 18.011 -9.948
{c1* c b 15}P -5.453 18.011 -9.948 {c2* c b 15}-4.306 17.897 -10.931
{o3* c b 15}P -4.018 16.052 -12.666 {p c b 16}-2.482 15.614 -12.853
{o1p c b 16}-2.318 14.341 -12.261
{p c b 16}P -2.482 15.614 -12.853 {o2p c b 16}-2.585 15.371 -14.401
{p c b 16}P -2.482 15.614 -12.853 {o5* c b 16}-1.84 16.944 -12.475
{c5* c b 16}-0.403 16.969 -12.608
{c4* c b 16}0.047 18.388 -12.315
{o4* c b 16}-0.78 18.944 -11.336
{c4* c b 16}P 0.047 18.388 -12.315 {c3* c b 16}1.463 18.441 -11.794
{o3* c b 16}2.299 19.142 -12.737
{c3* c b 16}P 1.463 18.441 -11.794 {c2* c b 16}1.396 19.151 -10.455
{o4* c b 16}P -0.78 18.944 -11.336 {c1* c b 16}-0.082 19.292 -10.157
{c2* c b 16}P 1.396 19.151 -10.455 {c1* c b 16}-0.082 19.292 -10.157
{c1* c b 16}P -0.082 19.292 -10.157 {c2* c b 16}1.396 19.151 -10.455
@subgroup {AT base-pr} dominant
@vectorlist {A} color= pink master= {strand a}
{c1* a a 4}P -10.778 21.937 -6.687 {n9 a a 4}-10.246 21.511 -5.392
{c8 a a 4}-9.361 22.144 -4.565
{n7 a a 4}-9.031 21.491 -3.466
{c5 a a 4}-9.757 20.314 -3.608
{c6 a a 4}-9.869 19.195 -2.776
{n6 a a 4}-9.242 19. -1.628
{c6 a a 4}P -9.869 19.195 -2.776 {n1 a a 4}-10.668 18.226 -3.266
{c2 a a 4}-11.34 18.311 -4.436
{n3 a a 4}-11.295 19.345 -5.259
{c4 a a 4}-10.483 20.306 -4.778
{c5 a a 4}-9.757 20.314 -3.608
{n9 a a 4}P -10.246 21.511 -5.392 {c4 a a 4}-10.483 20.306 -4.778
{n3 a a 4}-11.295 19.345 -5.259
@vectorlist {T} color= sky master= {strand a}
{c1* t a 5}P -15.379 20.367 -4.525 {n1 t a 5}-14.398 20.542 -3.444
{c2 t a 5}-14.133 19.378 -2.745
{o2 t a 5}-14.737 18.331 -3.048
{c2 t a 5}P -14.133 19.378 -2.745 {n3 t a 5}-13.234 19.443 -1.735
{c4 t a 5}-12.579 20.57 -1.393
{o4 t a 5}-11.738 20.558 -0.44
{c4 t a 5}P -12.579 20.57 -1.393 {c5 t a 5}-12.834 21.742 -2.136
{c5m t a 5}-12.115 23.011 -1.775
{n1 t a 5}P -14.398 20.542 -3.444 {c6 t a 5}-13.726 21.673 -3.132
{c5 t a 5}-12.834 21.742 -2.136
@vectorlist {A} color= pink master= {strand b}
{c1* a b 12}P -13.403 12.524 1.922 {n9 a b 12}-12.623 13.761 2.029
{c8 a b 12}-11.607 14.118 2.843
{n7 a b 12}-11.178 15.346 2.629
{c5 a b 12}-11.972 15.813 1.593
{c6 a b 12}-12.021 17.034 0.903
{n6 a b 12}-11.256 18.092 1.121
{c6 a b 12}P -12.021 17.034 0.903 {n1 a b 12}-12.953 17.082 -0.089
{c2 a b 12}-13.766 16.056 -0.387
{n3 a b 12}-13.768 14.892 0.222
{c4 a b 12}-12.85 14.843 1.206
{c5 a b 12}-11.972 15.813 1.593
{n9 a b 12}P -12.623 13.761 2.029 {c4 a b 12}-12.85 14.843 1.206
{n3 a b 12}-13.768 14.892 0.222
@vectorlist {T} color= sky master= {strand b}
{c1* t b 13}P -12.211 12.406 -2.959 {n1 t b 13}-11.384 13.416 -2.305
{c2 t b 13}-11.466 14.693 -2.803
{o2 t b 13}-12.218 14.916 -3.737
{c2 t b 13}P -11.466 14.693 -2.803 {n3 t b 13}-10.675 15.618 -2.198
{c4 t b 13}-9.837 15.342 -1.175
{o4 t b 13}-9.104 16.247 -0.685
{c4 t b 13}P -9.837 15.342 -1.175 {c5 t b 13}-9.78 14.02 -0.672
{c5m t b 13}-8.844 13.68 0.449
{n1 t b 13}P -11.384 13.416 -2.305 {c6 t b 13}-10.558 13.096 -1.264
{c5 t b 13}-9.78 14.02 -0.672
@vectorlist {AT Hb} color= gray master= {base-pr Hb}
{n3 t b 13}P U -10.673 16.266 -2.463 {n1 a a 4}U -10.67 17.578 -3.001
{o4 t b 13}P U -9.137 16.908 -0.912 {n6 a a 4}U -9.209 18.339 -1.401
{n1 a b 12}P U -13.021 17.654 -0.487 {n3 t a 5}U -13.166 18.871 -1.337
{o4 t a 5}P U -11.624 19.974 -0.071 {n6 a b 12}U -11.37 18.676 0.752
@subgroup {GC base-pr} dominant
@vectorlist {G} color= sea master= {strand a}
{c1* g a 1}P 3.742 22.062 -0.654 {n9 g a 1}2.941 20.886 -1.001
{c8 g a 1}2.594 19.856 -0.169
{n7 g a 1}1.887 18.915 -0.747
{c5 g a 1}1.822 19.321 -2.069
{c6 g a 1}1.211 18.725 -3.19
{o6 g a 1}0.562 17.666 -3.203
{c6 g a 1}P 1.211 18.725 -3.19 {n1 g a 1}1.37 19.447 -4.347
{c2 g a 1}2.037 20.627 -4.382
{n2 g a 1}2.1 21.263 -5.548
{c2 g a 1}P 2.037 20.627 -4.382 {n3 g a 1}2.637 21.227 -3.363
{c4 g a 1}2.47 20.517 -2.233
{c5 g a 1}1.822 19.321 -2.069
{n9 g a 1}P 2.941 20.886 -1.001 {c4 g a 1}2.47 20.517 -2.233
{n3 g a 1}2.637 21.227 -3.363
{c1* g a 2}P 0.049 24.711 -3.751 {n9 g a 2}-0.398 23.368 -3.368
{c8 g a 2}-0.297 22.748 -2.153
{n7 g a 2}-0.841 21.555 -2.14
{c5 g a 2}-1.346 21.393 -3.421
{c6 g a 2}-2.056 20.327 -4.013
{o6 g a 2}-2.374 19.248 -3.501
{c6 g a 2}P -2.056 20.327 -4.013 {n1 g a 2}-2.402 20.538 -5.321
{c2 g a 2}-2.082 21.669 -5.975
{n2 g a 2}-2.484 21.71 -7.247
{c2 g a 2}P -2.082 21.669 -5.975 {n3 g a 2}-1.428 22.703 -5.459
{c4 g a 2}-1.093 22.496 -4.182
{c5 g a 2}-1.346 21.393 -3.421
{n9 g a 2}P -0.398 23.368 -3.368 {c4 g a 2}-1.093 22.496 -4.182
{n3 g a 2}-1.428 22.703 -5.459
{c1* g a 3}P -4.873 24.127 -5.886 {n9 g a 3}-4.927 23.076 -4.881
{c8 g a 3}-4.379 23.052 -3.635
{n7 g a 3}-4.608 21.949 -2.972
{c5 g a 3}-5.374 21.199 -3.857
{c6 g a 3}-5.961 19.913 -3.733
{o6 g a 3}-5.889 19.13 -2.767
{c6 g a 3}P -5.961 19.913 -3.733 {n1 g a 3}-6.676 19.528 -4.845
{c2 g a 3}-6.79 20.319 -5.948
{n2 g a 3}-7.507 19.824 -6.972
{c2 g a 3}P -6.79 20.319 -5.948 {n3 g a 3}-6.221 21.515 -6.135
{c4 g a 3}-5.559 21.884 -5.027
{c5 g a 3}-5.374 21.199 -3.857
{n9 g a 3}P -4.927 23.076 -4.881 {c4 g a 3}-5.559 21.884 -5.027
{n3 g a 3}-6.221 21.515 -6.135
@vectorlist {C} color= yellow master= {strand a}
{c1* c a 6}P -18.465 18.153 -0.943 {n1 c a 6}-17.362 18.863 -0.285
{c2 c a 6}-16.746 18.202 0.743
{o2 c a 6}-17.156 17.086 1.068
{c2 c a 6}P -16.746 18.202 0.743 {n3 c a 6}-15.716 18.818 1.397
{c4 c a 6}-15.304 20.067 1.072
{n4 c a 6}-14.297 20.684 1.713
{c4 c a 6}P -15.304 20.067 1.072 {c5 c a 6}-15.96 20.748 0.009
{c6 c a 6}-16.95 20.112 -0.623
{n1 c a 6}-17.362 18.863 -0.285
{c1* c a 7}P -19.46 17.151 4.396 {n1 c a 7}-18.54 18.291 4.436
{c2 c a 7}-17.477 18.137 5.303
{o2 c a 7}-17.388 17.139 6.011
{c2 c a 7}P -17.477 18.137 5.303 {n3 c a 7}-16.561 19.146 5.339
{c4 c a 7}-16.686 20.246 4.551
{n4 c a 7}-15.756 21.19 4.645
{c4 c a 7}P -16.686 20.246 4.551 {c5 c a 7}-17.786 20.383 3.675
{c6 c a 7}-18.688 19.382 3.644
{n1 c a 7}-18.54 18.291 4.436
{c1* c a 8}P -19.179 17.832 10.028 {n1 c a 8}-18.615 19.045 9.432
{c2 c a 8}-17.421 19.394 10.015
{o2 c a 8}-17.006 18.708 10.962
{c2 c a 8}P -17.421 19.394 10.015 {n3 c a 8}-16.791 20.501 9.521
{c4 c a 8}-17.327 21.211 8.498
{n4 c a 8}-16.7 22.298 8.013
{c4 c a 8}P -17.327 21.211 8.498 {c5 c a 8}-18.552 20.793 7.879
{c6 c a 8}-19.158 19.702 8.377
{n1 c a 8}-18.615 19.045 9.432
@vectorlist {G} color= sea master= {strand b}
{c1* g b 9}P -10.984 22.529 14.513 {n9 g b 9}-11.633 22.963 13.276
{c8 g b 9}-11.373 24.078 12.533
{n7 g b 9}-12.124 24.204 11.461
{c5 g b 9}-12.944 23.076 11.523
{c6 g b 9}-13.986 22.618 10.669
{o6 g b 9}-14.407 23.137 9.632
{c6 g b 9}P -13.986 22.618 10.669 {n1 g b 9}-14.564 21.446 11.074
{c2 g b 9}-14.194 20.781 12.186
{n2 g b 9}-14.864 19.678 12.506
{c2 g b 9}P -14.194 20.781 12.186 {n3 g b 9}-13.232 21.182 13.022
{c4 g b 9}-12.653 22.33 12.631
{c5 g b 9}-12.944 23.076 11.523
{n9 g b 9}P -11.633 22.963 13.276 {c4 g b 9}-12.653 22.33 12.631
{n3 g b 9}-13.232 21.182 13.022
{c1* g b 10}P -11.691 18.116 11.505 {n9 g b 10}-11.85 19.041 10.38
{c8 g b 10}-11.117 20.124 10.028
{n7 g b 10}-11.553 20.724 8.938
{c5 g b 10}-12.656 19.966 8.551
{c6 g b 10}-13.543 20.083 7.457
{o6 g b 10}-13.546 20.947 6.567
{c6 g b 10}P -13.543 20.083 7.457 {n1 g b 10}-14.51 19.098 7.416
{c2 g b 10}-14.573 18.112 8.36
{n2 g b 10}-15.571 17.228 8.24
{c2 g b 10}P -14.573 18.112 8.36 {n3 g b 10}-13.773 17.942 9.405
{c4 g b 10}-12.836 18.923 9.432
{c5 g b 10}-12.656 19.966 8.551
{n9 g b 10}P -11.85 19.041 10.38 {c4 g b 10}-12.836 18.923 9.432
{c5 g b 10}-12.656 19.966 8.551
{n3 g b 10}-13.773 17.942 9.405
{c1* g b 11}P -12.937 14.312 7.359 {n9 g b 11}-12.623 15.505 6.602
{c8 g b 11}-11.647 16.409 6.829
{n7 g b 11}-11.698 17.455 6.037
{c5 g b 11}-12.796 17.2 5.219
{c6 g b 11}-13.365 17.901 4.129
{o6 g b 11}-12.97 18.968 3.635
{c6 g b 11}P -13.365 17.901 4.129 {n1 g b 11}-14.466 17.309 3.568
{c2 g b 11}-14.976 16.133 4.022
{n2 g b 11}-16.063 15.638 3.408
{c2 g b 11}P -14.976 16.133 4.022 {n3 g b 11}-14.459 15.423 5.018
{c4 g b 11}-13.361 15.995 5.561
{c5 g b 11}-12.796 17.2 5.219
{n9 g b 11}P -12.623 15.505 6.602 {c4 g b 11}-13.361 15.995 5.561
{n3 g b 11}-14.459 15.423 5.018
@vectorlist {C} color= yellow master= {strand b}
{c1* c b 14}P -9.703 14.876 -7.376 {n1 c b 14}-8.905 15.196 -6.193
{c2 c b 14}-8.596 16.535 -6.042
{o2 c b 14}-8.959 17.366 -6.874
{c2 c b 14}P -8.596 16.535 -6.042 {n3 c b 14}-7.851 16.875 -4.947
{c4 c b 14}-7.458 15.934 -4.035
{n4 c b 14}-6.699 16.308 -2.999
{c4 c b 14}P -7.458 15.934 -4.035 {c5 c b 14}-7.825 14.576 -4.2
{c6 c b 14}-8.537 14.268 -5.299
{n1 c b 14}-8.905 15.196 -6.193
{c1* c b 15}P -5.453 18.011 -9.948 {n1 c b 15}-5.018 17.695 -8.587
{c2 c b 15}-4.32 18.684 -7.933
{o2 c b 15}-4.112 19.767 -8.493
{c2 c b 15}P -4.32 18.684 -7.933 {n3 c b 15}-3.88 18.425 -6.66
{c4 c b 15}-4.142 17.248 -6.042
{n4 c b 15}-3.723 17.034 -4.8
{c4 c b 15}P -4.142 17.248 -6.042 {c5 c b 15}-4.861 16.247 -6.731
{c6 c b 15}-5.273 16.514 -7.973
{n1 c b 15}-5.018 17.695 -8.587
{c1* c b 16}P -0.082 19.292 -10.157 {n1 c b 16}-0.368 18.441 -8.978
{c2 c b 16}0.133 18.992 -7.817
{o2 c b 16}0.747 20.047 -7.821
{c2 c b 16}P 0.133 18.992 -7.817 {n3 c b 16}-0.012 18.303 -6.651
{c4 c b 16}-0.712 17.139 -6.593
{n4 c b 16}-0.873 16.502 -5.428
{c4 c b 16}P -0.712 17.139 -6.593 {c5 c b 16}-1.222 16.596 -7.799
{c6 c b 16}-1.028 17.265 -8.938
{n1 c b 16}-0.368 18.441 -8.978
@vectorlist {GC Hb} color= gray master= {base-pr Hb}
{n2 g a 1}P U 1.775 20.971 -6.095 {o2 c b 16}U 1.072 20.339 -7.274
{n3 c b 16}P U 0.319 18.577 -6.099 {n1 g a 1}U 1.039 19.173 -4.899
{o6 g a 1}P U 0.215 17.384 -3.742 {n4 c b 16}U -0.526 16.784 -4.889
{n2 g a 2}P U -2.887 21.228 -7.556 {o2 c b 15}U -3.709 20.249 -8.184
{n3 c b 15}P U -3.524 18.934 -6.337 {n1 g a 2}U -2.758 20.029 -5.644
{o6 g a 2}P U -2.7 18.714 -3.815 {n4 c b 15}U -3.397 17.568 -4.486
{n2 g a 3}P U -7.863 19.222 -6.948 {o2 c b 14}U -8.603 17.968 -6.898
{n3 c b 14}P U -7.568 17.515 -4.922 {n1 g a 3}U -6.959 18.888 -4.87
{o6 g a 3}P U -6.082 18.459 -2.822 {n4 c b 14}U -6.506 16.979 -2.944
{o2 c a 6}P U -16.898 16.744 1.621 {n2 g b 11}U -16.321 15.98 2.855
{n1 g b 11}P U -14.765 17.67 3.048 {n3 c a 6}U -15.417 18.457 1.917
{n4 c a 6}P U -13.976 20.27 2.177 {o6 g b 11}U -13.291 19.382 3.171
{o2 c a 7}P U -16.946 17.161 6.553 {n2 g b 10}U -16.013 17.206 7.698
{n1 g b 10}P U -15.002 19.11 6.918 {n3 c a 7}U -16.069 19.134 5.837
{n4 c a 7}P U -15.23 21.132 5.103 {o6 g b 10}U -14.072 21.005 6.109
{n2 g b 9}P U -15.397 19.437 12.122 {o2 c a 8}U -16.473 18.949 11.346
{n1 g b 9}P U -15.106 21.216 10.696 {n3 c a 8}U -16.249 20.731 9.899
{n4 c a 8}P U -16.152 22.498 8.4 {o6 g b 9}U -14.955 22.937 9.245
@group {labels} dominant
@labellist {Drawn} color= gray     
{Minor} -15.56 15.642 -5.412
{Major groove} -9.277 20.292 1.96

@kinemage 4
@caption  (B&T Fig. 7.2c)
Z DNA duplex (lengthened by self-superposition).  Sugar-phosphate backbone shown in white (strand a) or yellowtint (strand b);  bases color-coded as G seagreen, C yellow, A pink, and U skyblue;  base-pair Hbonds in gray.  Z conformation was favored by de-methylation of some bases; crystal structure was 6 base-pairs long.  (from PDB file 1D41)
@onewidth
@viewid {side}
@zoom 1.18
@zslab 160
@center 11.694 17.082 12.921
@matrix
.813957 -.027845 .580258 .579178 .116306 -.806862 -.045021 .992823 .110796
@2viewid {end}
@2zoom 1.25
@2zslab 200
@2center 11.694 17.082 12.921
@2matrix
.86555 .50079 .00606 .50075 -.86557 .00666 .00858 -.00273 -.99996
@3viewid {bb closeup}
@3zoom 2.83
@3zslab 180
@3center 13.846 18.577 10.97
@3matrix
-.79748 .18428 .57451 .42053 -.51303 .7483 .43264 .83835 .33164
@4viewid {stack closeup}
@4zoom 2.7
@4zslab 180
@4center 15.329 18.983 11.063
@4matrix
-.38443  .13757 -.91285 -.92144 -.11746 .37035 -.05627 .9835 .17191
@5viewid {major groove}
@5zoom 1.30 
@5zslab 190 
@5center 11.694 17.082 12.921 
@5matrix 
-0.95137 -0.18320  0.24764  0.30655 -0.64193  0.70282  0.03021  0.74456  0.66687
@6viewid {minor groove}
@6zoom 1.30 
@6zslab 290 
@6center 14.225 16.393 11.498 
@6matrix 
-0.99917 -0.03508 -0.02049  0.04058 -0.83695 -0.54578  0.00199 -0.54616  0.83768
@group {Z DNA} 
@subgroup dominant {sugar-phos} 
@vectorlist {mc} color= white master= {strand a}
{o5* c a 1}P 7.426 12.471 -3.857 {c5* c a 1}7.145 13.59 -2.99
{c4* c a 1}8.34 14.468 -2.775
{o4* c a 1}9.536 13.595 -2.318
{c3* c a 1}P 8.976 15.174 -3.929 {c2* c a 1}10.201 14.303 -4.481
{c1* c a 1}10.629 13.819 -3.077
{o4* c a 1}9.536 13.595 -2.318
{c4* c a 1}P 8.34 14.468 -2.775 {c3* c a 1}8.976 15.174 -3.929
{o3* c a 1}9.456 16.428 -3.547
{p g a 2}8.441 17.715 -3.66
{o1p g a 2}9.483 18.747 -3.422
{o2p g a 2}P 7.543 17.393 -4.673 {p g a 2}8.441 17.715 -3.66
{o5* g a 2}7.314 17.486 -2.57
{c5* g a 2}7.689 17.792 -1.314
{c4* g a 2}6.468 17.76 -0.515
{o4* g a 2}6.126 16.389 -0.595
{c3* g a 2}P 6.999 17.932 1.023 {c2* g a 2}6.291 16.996 1.882
{c1* g a 2}5.889 15.839 0.782
{o4* g a 2}P 6.126 16.389 -0.595 {c1* g a 2}5.889 15.839 0.782
{c4* g a 2}P 6.468 17.76 -0.515 {c3* g a 2}6.999 17.932 1.023
{o3* g a 2}6.757 19.297 1.32
{p u a 3}7.958 20.34 1.908
{o1p u a 3}6.918 21.43 2.212
{o2p u a 3}P 8.749 20.478 0.626 {p u a 3}7.958 20.34 1.908
{o5* u a 3}8.792 19.755 3.159
{c5* u a 3}9.303 20.713 4.112
{c4* u a 3}10.506 19.861 4.398
{o4* u a 3}10.234 18.517 4.836
{c3* u a 3}P 11.282 19.616 3.112 {c2* u a 3}11.159 18.137 2.684
{c1* u a 3}11.085 17.631 4.266
{o4* u a 3}10.234 18.517 4.836
{c4* u a 3}P 10.506 19.861 4.398 {c3* u a 3}11.282 19.616 3.112
{o3* u a 3}12.569 20.08 3.481
{p a a 4}12.951 21.697 3.298
{o1p a a 4}14.361 21.604 2.941
{o2p a a 4}P 12.114 22.341 2.349 {p a a 4}12.951 21.697 3.298
{o5* a a 4}12.591 22.49 4.652
{c5* a a 4}13.086 22.014 5.936
{c4* a a 4}12.399 22.902 6.907
{o4* a a 4}11.037 22.714 6.7
{c3* a a 4}P 12.686 22.499 8.357 {c2* a a 4}11.38 22.706 9.05
{c1* a a 4}10.24 22.661 8.035
{o4* a a 4}11.037 22.714 6.7
{c4* a a 4}P 12.399 22.902 6.907 {c3* a a 4}12.686 22.499 8.357
{o3* a a 4}13.867 23.367 8.479
{p c a 5}14.584 23.38 9.926
{o1p c a 5}15.901 24.039 9.621
{o2p c a 5}P 13.466 23.845 10.693 {p c a 5}14.584 23.38 9.926
{o5* c a 5}14.698 21.86 10.535
{c5* c a 5}15.566 21.829 11.789
{c4* c a 5}15.528 20.321 12.006
{o4* c a 5}14.151 20.006 12.27
{c3* c a 5}P 15.666 19.358 10.785 {c2* c a 5}14.441 18.677 10.356
{c1* c a 5}13.741 18.793 11.727
{o4* c a 5}14.151 20.006 12.27
{c4* c a 5}P 15.528 20.321 12.006 {c3* c a 5}15.666 19.358 10.785
{o3* c a 5}16.537 18.258 11.207
{p g a 2x} 18.163 18.661 11.032
{o1p g a 2x} 18.541 17.248 11.296
{o2p g a 2x} P 18.33 19.582 10.003 {p g a 2x} 18.163 18.661 11.032
{o5* g a 2x} 18.522 19.772 12.103
{c5* g a 2x} 18.6 19.317 13.367
{c4* g a 2x} 19.177 20.408 14.148
{o4* g a 2x} 18.157 21.383 14.049
{c3* g a 2x} P 19.06 19.889 15.695 {c2* g a 2x} 18.598 20.984 16.534
{c1* g a 2x} 17.795 21.887 15.416
{o4* g a 2x} 18.157 21.383 14.049
{c4* g a 2x} P 19.177 20.408 14.148 {c3* g a 2x} 19.06 19.889 15.695
{o3* g a 2x} 20.365 19.427 16.002
{p u a 3x} 20.674 17.878 16.619
{o1p u a 3x} 22.136 18.245 16.918
{o2p u a 3x} P 20.403 17.099 15.35 {p u a 3x} 20.674 17.878 16.619
{o5* u a 3x} 19.75 17.467 17.876
{c5* u a 3x} 20.327 16.565 18.846
{c4* u a 3x} 18.99 15.949 19.142
{o4* u a 3x} 17.957 16.859 19.562
{c3* u a 3x} P 18.393 15.373 17.865 {c2* u a 3x} 17.171 16.206 17.42
{c1* u a 3x} 16.766 16.55 18.996
{o4* u a 3x} 17.957 16.859 19.562
{c4* u a 3x} P 18.99 15.949 19.142 {c3* u a 3x} 18.393 15.373 17.865
{o3* u a 3x} 18.157 14.033 18.258
{p a a 4x} 19.371 12.895 18.097
{o1p a a 4x} 18.591 11.711 17.76
{o2p a a 4x} P 20.347 13.285 17.142 {p a a 4x} 19.371 12.895 18.097
{o5* a a 4x} 20.237 12.839 19.453
{c5* a a 4x} 19.576 12.668 20.74
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{o4* a a 4x} 21.199 14.113 21.48
{c4* a a 4x} P 20.686 12.841 21.709 {c3* a a 4x} 20.192 12.819 23.159
{o3* a a 4x} 20.359 11.365 23.308
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{o1p c a 5x} 19.931 9.286 24.487
{o2p c a 5x} P 20.97 11.516 25.52 {p c a 5x} 20.013 10.762 24.765
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{c4* c a 5x} 16.886 11.498 26.828
{o4* c a 5x} 17.295 12.855 27.068
{c3* c a 5x} P 15.983 11.834 25.6 {c2* c a 5x} 16. 13.228 25.145
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{o4* c a 5x} 17.295 12.855 27.068
{c4* c a 5x} P 16.886 11.498 26.828 {c3* c a 5x} 15.983 11.834 25.6
{o3* c a 5x} 14.595 11.632 26.023
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{o1p g a 6x} 12.496 10.518 26.181
{o2p g a 6x} P 14.317 9.595 24.611 {p g a 6x} 13.93 10.171 25.834
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{o4* g a 6x} 16.486 8.55 28.881
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{o3* g a 6x} 14.795 6.793 30.743
{c3* g a 6x} P 14.541 8.132 30.2 {c2* g a 6x} 15.531 8.902 30.905
{c1* g a 6x} 16.853 8.854 30.196
{o4* g a 6x} 16.486 8.55 28.881
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{c5* c b 7x} 13.376 22.767 29.171
{c4* c b 7x} 12.922 21.295 29.037
{o4* c b 7x} 14.041 20.39 28.699
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{c2* c b 7x} P 13.576 19.491 30.629 {c1* c b 7x} 14.08 19.123 29.306
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{c4* c b 7x} P 12.922 21.295 29.037 {c3* c b 7x} 12.402 20.524 30.222
{o3* c b 7x} 11.267 19.768 29.988
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{o4* g b 8x} 10.53 22.726 26.614
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{o3* g b 8x} 8.246 21.007 24.64
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{o1p u b 9x} 5.993 20.057 24.022
{o2p u b 9x} P 7.443 18.829 25.35 {p u b 9x} 7.456 19.7 24.268
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{o4* u b 9x} 10.099 17.563 21.374
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{o3* u b 9x} 9.234 15.031 22.757
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{o1p a b 10x} 7.18 14.24 23.916
{o2p a b 10x} P 8.529 12.745 22.39 {p a b 10x} 8.019 13.968 22.748
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{o4* a b 10x} 6.335 15.863 19.413
{c4* a b 10x} P 6.457 14.423 19.188 {c3* a b 10x} 6.826 14.404 17.745
{o3* a b 10x} 5.965 13.487 17.148
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{o1p c b 11x} 5.052 11.553 15.683
{o2p c b 11x} P 6.982 11.329 17.414 {p c b 11x} 6.341 12.129 16.337
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{c5* c b 11x} 7.989 11.91 14.373
{c4* c b 11x} 9.42 12.157 14.12
{o4* c b 11x} 9.49 13.585 13.759
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{o4* c b 11x} 9.49 13.585 13.759
{c4* c b 11x} P 9.42 12.157 14.12 {c3* c b 11x} 10.313 12.073 15.369
{o3* c b 11x} 11.535 11.475 14.993
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{o1p g b 8}10.84 9.394 16.523
{o2p g b 8}P 12.808 9.695 15.184 {p g b 8}11.417 9.867 15.297
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{c4* g b 8}P 10.239 8.77 11.854 {c3* g b 8}10.709 9.186 10.314
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{p u b 9}13.051 8.039 9.607
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{o4* a b 10}16.866 8.921 4.685
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{o4* a b 10}16.866 8.921 4.685
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{o2p c b 11}P 20.45 11.712 2.604 {p c b 11}20.058 10.748 1.543
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{c5* c b 11}19.401 12.267 -0.427
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{o4* c b 11}17.192 12.733 -1.013
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{c4* c b 11}P 18.472 13.384 -0.678 {c3* c b 11}18.12 14.214 0.568
{o3* c b 11}18.027 15.568 0.18
{p g b 12}19.327 16.489 0.368
{o1p g b 12}19.983 16.227 1.613
{o2p g b 12}P 18.779 17.809 0.03 {p g b 12}19.327 16.489 0.368
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{c1* g b 12}21.22 13.68 -3.939
{o4* g b 12}21.22 14.222 -2.602
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{n7 a a 4}7.651 20.176 7.776
{c5 a a 4}8.795 19.435 7.855
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{n9 a a 4}P 9.458 21.472 7.958 {c4 a a 4}9.885 20.167 7.975
{n3 a a 4}11.155 19.661 8.071
{c1* a a 4x} P 21.547 14.855 22.802 {n9 a a 4x} 20.903 16.123 22.702
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{n7 a a 4x} 20.675 18.331 22.479
{c5 a a 4x} 19.464 17.707 22.568
{c6 a a 4x} 18.126 18.28 22.508
{n6 a a 4x} 17.964 19.661 22.261
{c6 a a 4x} P 18.126 18.28 22.508 {n1 a a 4x} 17.084 17.492 22.609
{c2 a a 4x} 17.303 16.175 22.759
{n3 a a 4x} 18.489 15.551 22.822
{c4 a a 4x} 19.558 16.4 22.712
{c5 a a 4x} 19.464 17.707 22.568
{n9 a a 4x} P 20.903 16.123 22.702 {c4 a a 4x} 19.558 16.4 22.712
{n3 a a 4x} 18.489 15.551 22.822
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{c2 u a 3}11.037 15.236 4.202
{o2 u a 3}12.285 15.274 4.103
{c2 u a 3}P 11.037 15.236 4.202 {n3 u a 3}10.407 14.042 4.13
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{o4 u a 3}8.602 12.702 4.159
{c4 u a 3}P 9.086 13.877 4.27 {c5 u a 3}8.3 15.032 4.328
{c6 u a 3}8.92 16.217 4.386
{n1 u a 3}10.285 16.351 4.282
{c1* u a 3x} P 16.766 16.55 18.996 {n1 u a 3x} 16.052 17.88 18.987
{c2 u a 3x} 14.711 17.779 18.907
{o2 u a 3x} 14.125 16.675 18.827
{c2 u a 3x} P 14.711 17.779 18.907 {n3 u a 3x} 13.988 18.917 18.813
{c4 u a 3x} 14.5 20.148 18.932
{o4 u a 3x} 13.72 21.15 18.801
{c4 u a 3x} P 14.5 20.148 18.932 {c5 u a 3x} 15.893 20.259 18.99
{c6 u a 3x} 16.613 19.133 19.069
{n1 u a 3x} 16.052 17.88 18.987
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{c8 a b 10x} 6.847 19.044 18.506
{n7 a b 10x} 7.873 19.908 18.597
{c5 a b 10x} 8.993 19.103 18.393
{c6 a b 10x} 10.389 19.402 18.482
{n6 a b 10x} 10.776 20.725 18.607
{c6 a b 10x} P 10.389 19.402 18.482 {n1 a b 10x} 11.263 18.383 18.276
{c2 a b 10x} 10.839 17.137 18.079
{n3 a b 10x} 9.512 16.731 18.044
{c4 a b 10x} 8.664 17.738 18.236
{c5 a b 10x} 8.993 19.103 18.393
{n9 a b 10x} P 7.259 17.742 18.362 {c4 a b 10x} 8.664 17.738 18.236
{n3 a b 10x} 9.512 16.731 18.044
{c1* a b 10}P 16.101 8.464 3.601 {n9 a b 10}14.76 8.78 3.667
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{n7 a b 10}12.579 8.24 3.94
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{c6 a b 10}11.768 10.674 3.813
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{n9 a b 10}P 14.76 8.78 3.667 {c4 a b 10}14.065 10. 3.539
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{c2 u b 9x} 13.419 17.673 22.264
{o2 u b 9x} 13.641 16.514 22.338
{c2 u b 9x} P 13.419 17.673 22.264 {n3 u b 9x} 14.394 18.618 22.265
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{o4 u b 9x} 15.245 20.589 22.277
{c4 u b 9x} P 14.214 19.93 22.173 {c5 u b 9x} 12.875 20.392 22.001
{c6 u b 9x} 11.877 19.541 21.926
{n1 u b 9x} 12.204 18.165 22.121
{c1* u b 9}P 13.558 12.534 7.361 {n1 u b 9}11.995 12.901 7.426
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{o2 u b 9}12.718 14.97 7.612
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{c4 u b 9}P 9.466 13.77 7.507 {c5 u b 9}9.727 12.377 7.346
{c6 u b 9}10.96 11.932 7.257
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{n1 a a 4}P U 10.248 16.785 7.819 {n3 u b 9}U 10.433 15.27 7.651
{o4 u a 3}P U 9.031 12.151 4.113 {n6 a b 10}U 10. 10.906 4.007
{n3 u a 3}P U 10.855 13.521 3.996 {n1 a b 10}U 11.767 12.458 3.721
{n6 a b 10}P U 11.467 20.825 18.653 {o4 u a 3}U 13.029 21.05 18.755
{n3 u a 3}P U 13.314 18.785 18.68 {n1 a b 10}U 11.937 18.515 18.409
{o4 u b 9}P U 15.907 20.363 22.273 {n6 a a 4}U 17.302 19.887 22.265
{n1 a a 4}P U 16.443 17.76 22.527 {n3 u b 9}U 15.035 18.35 22.347
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{c6 g a 2}P 9.244 12.4 0.816 {n1 g a 2}10.245 13.3 0.688
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{c2 g a 2}P 10.011 14.581 0.578 {n3 g a 2}8.916 15.232 0.62
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{n3 g a 2}8.916 15.232 0.62
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{c8 g a 2x} 15.755 23.095 15.499
{n7 g a 2x} 14.413 22.919 15.579
{c5 g a 2x} 14.33 21.533 15.448
{c6 g a 2x} 13.144 20.682 15.466
{o6 g a 2x} 11.96 21.122 15.457
{c6 g a 2x} P 13.144 20.682 15.466 {n1 g a 2x} 13.429 19.364 15.362
{c2 g a 2x} 14.657 18.93 15.261
{n2 g a 2x} 14.826 17.694 15.167
{c2 g a 2x} P 14.657 18.93 15.261 {n3 g a 2x} 15.766 19.558 15.293
{c4 g a 2x} 15.527 20.896 15.374
{c5 g a 2x} 14.33 21.533 15.448
{n9 g a 2x} P 16.472 21.954 15.472 {c4 g a 2x} 15.527 20.896 15.374
{n3 g a 2x} 15.766 19.558 15.293
{c1* g a 6x} P 16.853 8.854 30.196 {n9 g a 6x} 17.705 10.067 30.144
{c8 g a 6x} 19.005 9.964 30.078
{n7 g a 6x} 19.59 11.153 30.075
{c5 g a 6x} 18.472 12.066 30.052
{c6 g a 6x} 18.444 13.467 29.931
{o6 g a 6x} 19.415 14.266 29.777
{c6 g a 6x} P 18.444 13.467 29.931 {n1 g a 6x} 17.194 14.069 29.998
{c2 g a 6x} 16.17 13.27 29.913
{n2 g a 6x} 14.998 13.843 29.924
{c2 g a 6x} P 16.17 13.27 29.913 {n3 g a 6x} 16.062 11.918 30.14
{c4 g a 6x} 17.336 11.403 30.09
{c5 g a 6x} 18.472 12.066 30.052
{n9 g a 6x} P 17.705 10.067 30.144 {c4 g a 6x} 17.336 11.403 30.09
{n3 g a 6x} 16.062 11.918 30.14
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{c4 c a 1}P 12.959 10.403 -3.526 {c5 c a 1}11.571 10.193 -3.242
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{n1 c a 1}11.43 12.584 -3.282
{c1* c a 5}P 13.741 18.793 11.727 {n1 c a 5}12.225 18.631 11.604
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{c2 c a 5}P 11.765 17.358 11.471 {n3 c a 5}10.403 17.258 11.428
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{c4 c a 5}P 9.558 18.354 11.361 {c5 c a 5}10.156 19.626 11.541
{c6 c a 5}11.463 19.754 11.662
{n1 c a 5}12.225 18.631 11.604
{c1* c a 5x} P 16.446 13.803 26.507 {n1 c a 5x} 17.058 15.197 26.36
{c2 c a 5x} 16.182 16.225 26.207
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{c2 c a 5x} P 16.182 16.225 26.207 {n3 c a 5x} 16.771 17.456 26.142
{c4 c a 5x} 18.142 17.645 26.074
{n4 c a 5x} 18.568 18.925 25.946
{c4 c a 5x} P 18.142 17.645 26.074 {c5 c a 5x} 18.949 16.498 26.276
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{n1 c a 5x} 17.058 15.197 26.36
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{c8 g b 8x} 13.36 23.752 25.214
{n7 g b 8x} 14.627 23.217 25.382
{c5 g b 8x} 14.387 21.868 25.438
{c6 g b 8x} 15.359 20.827 25.632
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{c6 g b 8x} P 15.359 20.827 25.632 {n1 g b 8x} 14.907 19.559 25.747
{c2 g b 8x} 13.559 19.359 25.749
{n2 g b 8x} 13.1 18.187 25.869
{c2 g b 8x} P 13.559 19.359 25.749 {n3 g b 8x} 12.571 20.27 25.581
{c4 g b 8x} 13.083 21.521 25.485
{c5 g b 8x} 14.387 21.868 25.438
{n9 g b 8x} P 12.428 22.807 25.284 {c4 g b 8x} 13.083 21.521 25.485
{n3 g b 8x} 12.571 20.27 25.581
{c1* g b 8}P 8.478 9.54 10.605 {n9 g b 8}7.902 10.824 10.672
{c8 g b 8}6.618 11.163 10.618
{n7 g b 8}6.456 12.53 10.774
{c5 g b 8}7.747 12.992 10.807
{c6 g b 8}8.171 14.354 10.98
{o6 g b 8}7.38 15.341 10.937
{c6 g b 8}P 8.171 14.354 10.98 {n1 g b 8}9.498 14.592 11.073
{c2 g b 8}10.34 13.521 11.073
{n2 g b 8}11.587 13.706 11.173
{c2 g b 8}P 10.34 13.521 11.073 {n3 g b 8}10.037 12.21 10.923
{c4 g b 8}8.696 12.032 10.849
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{n9 g b 8}P 7.902 10.824 10.672 {c4 g b 8}8.696 12.032 10.849
{n3 g b 8}10.037 12.21 10.923
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{c8 g b 12}20.68 11.308 -4.005
{n7 g b 12}19.569 10.532 -3.981
{c5 g b 12}18.503 11.409 -3.912
{c6 g b 12}17.087 11.144 -3.961
{o6 g b 12}16.632 9.941 -3.957
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{c2 g b 12}P 16.879 13.382 -3.949 {n3 g b 12}18.115 13.773 -4.003
{c4 g b 12}18.93 12.709 -3.977
{c5 g b 12}18.503 11.409 -3.912
{n9 g b 12}P 20.347 12.592 -3.975 {c4 g b 12}18.93 12.709 -3.977
{n3 g b 12}18.115 13.773 -4.003
@vectorlist {C b} color= yellow master= {strand b}
{c1* c b 7x} P 14.08 19.123 29.306 {n1 c b 7x} 15.566 18.732 29.318
{c2 c b 7x} 15.683 17.337 29.544
{o2 c b 7x} 14.764 16.537 29.665
{c2 c b 7x} P 15.683 17.337 29.544 {n3 c b 7x} 16.994 16.891 29.614
{c4 c b 7x} 18.067 17.718 29.55
{n4 c b 7x} 19.29 17.177 29.657
{c4 c b 7x} P 18.067 17.718 29.55 {c5 c b 7x} 17.905 19.117 29.428
{c6 c b 7x} 16.641 19.567 29.379
{n1 c b 7x} 15.566 18.732 29.318
{c1* c b 11x} P 10.507 14.217 14.354 {n1 c b 11x} 10.171 15.64 14.441
{c2 c b 11x} 11.305 16.374 14.778
{o2 c b 11x} 12.456 16.003 14.695
{c2 c b 11x} P 11.305 16.374 14.778 {n3 c b 11x} 11.037 17.729 14.824
{c4 c b 11x} 9.806 18.354 14.694
{n4 c b 11x} 9.773 19.706 14.884
{c4 c b 11x} P 9.806 18.354 14.694 {c5 c b 11x} 8.711 17.451 14.527
{c6 c b 11x} 8.894 16.165 14.339
{n1 c b 11x} 10.171 15.64 14.441
{c1* c b 11}P 16.148 13.308 -0.408 {n1 c b 11}15.081 12.311 -0.295
{c2 c b 11}13.886 12.935 0.054
{o2 c b 11}13.635 14.117 -0.038
{c2 c b 11}P 13.886 12.935 0.054 {n3 c b 11}12.843 12.03 0.124
{c4 c b 11}12.91 10.65 0.007
{n4 c b 11}11.756 9.952 0.222
{c4 c b 11}P 12.91 10.65 0.007 {c5 c b 11}14.235 10.146 -0.174
{c5m c b 11}14.531 8.7 -0.186
{n1 c b 11}P 15.081 12.311 -0.295 {c6 c b 11}15.257 10.941 -0.386
{c5 c b 11}14.235 10.146 -0.174
@vectorlist {bp Hb} color= gray master= {base-pr Hb}
{o2 c a 5}P U 12.231 15.73 11.418 {n2 g b 8}U 11.798 14.369 11.253
{n1 g b 8}P U 9.721 15.25 11.161 {n3 c a 5}U 10.18 16.6 11.34
{n4 c a 5}P U 8.027 17.423 11.179 {o6 g b 8}U 7.587 16.005 11.014
{n2 g a 2}P U 11.624 15.05 0.343 {o2 c b 11}U 13.009 14.407 0.08
{n3 c b 11}P U 12.226 12.332 0.258 {n1 g a 2}U 10.862 12.998 0.554
{o6 g a 2}P U 10.055 10.839 0.661 {n4 c b 11}U 11.151 10.267 0.378
{o2 c a 1}P U 14.049 14.042 -3.692 {n2 g b 12}U 15.536 14.348 -3.84
{n3 c a 1}P U 14.211 11.829 -3.686 {n1 g b 12}U 15.555 12.104 -3.882
{n4 c a 1}P U 14.487 9.459 -3.716 {o6 g b 12}U 15.953 9.789 -3.881
{o2 c b 11}P U 13.018 16.404 14.807 {n2 g a 2}U 14.264 17.293 15.055
{n1 g a 2}P U 12.861 18.976 15.234 {n3 c b 11}U 11.605 18.117 14.952
{n4 c b 11}P U 10.347 20.078 15.034 {o6 g a 2}U 11.386 20.75 15.307
{n2 g b 8}P U 13.57 17.677 25.959 {o2 c a 5}U 14.538 16.627 26.144
{n3 c a 5}P U 16.311 17.975 26.045 {n1 g b 8}U 15.367 19.04 25.844
{o6 g b 8}P U 17.082 20.515 25.674 {n4 c a 5}U 18.094 19.433 25.859
{o2 c b 7}P U 14.824 15.843 29.732 {n2 g a 6}U 14.938 14.537 29.857
{n1 g a 6}P U 17.145 14.761 29.904 {n3 c b 7}U 17.043 16.199 29.708
{n4 c b 7}P U 19.32 16.478 29.686 {o6 g a 6}U 19.385 14.965 29.748
@group {labels} dominant off
@labellist {Drawn} color= gray     
{Minor groove}   21.554, 14.537, 9.689
{ (Major)}   8.308, 18.984, 13.153


@kinemage 5 

@prekin 6.25 
@caption 
 coordinates from file: /Users/thomlabean/Desktop/HollidayJ.pdb 
@onewidth 
@pdbfile {HollidayJ.pdb} 
@group {Strands 1&2}   master= {all}
@subgroup {strand 1} dominant
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{ c5*   c a 1  M1} L -18.222, -3.355, 15.826 
{ c4*   c a 1  M1} L -18.196, -4.726, 15.172 
{ o4*   c a 1  M1} L -18.927, -4.672, 13.915 
{ c4*   c a 1  M1} P -18.196, -4.726, 15.172 { c3*   c a 1  M1} L -16.785, -5.165, 14.771 
{ o3*   c a 1  M1} L -16.695, -6.576, 14.679 
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{ o4*   c a 1  M1} P -18.927, -4.672, 13.915 { c1*   c a 1  M1} L -18.035, -4.807, 12.815 
{ c2*   c a 1  M1} P -16.621, -4.616, 13.354 { c1*   c a 1  M1} L -18.035, -4.807, 12.815 
{ c1*   c a 1  M1} P -18.035, -4.807, 12.815 { c2*   c a 1  M1} L -16.621, -4.616, 13.354 
{ o3*   c a 1  M1} P -16.695, -6.576, 14.679 { p     c a 2  M1} L -16.022, -7.428, 15.879 
{ o5*   c a 2  M1} L -14.688, -8.010, 15.195 
{ c5*   c a 2  M1} L -14.700, -8.757, 13.986 
{ c4*   c a 2  M1} L -13.553, -8.370, 13.075 
{ o4*   c a 2  M1} L -13.793, -7.119, 12.378 
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{ o3*   c a 2  M1} L -11.213, -8.777, 12.922 
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{ o4*   c a 2  M1} P -13.793, -7.119, 12.378 { c1*   c a 2  M1} L -12.585, -6.327, 12.429 
{ c2*   c a 2  M1} P -11.994, -6.666, 13.798 { c1*   c a 2  M1} L -12.585, -6.327, 12.429 
{ c1*   c a 2  M1} P -12.585, -6.327, 12.429 { c2*   c a 2  M1} L -11.994, -6.666, 13.798 
{ o3*   c a 2  M1} P -11.213, -8.777, 12.922 { p     g a 3  M1} L -10.396, -10.068, 13.410 
{ o5*   g a 3  M1} L -10.040, -10.875, 12.078 
{ c5*   g a 3  M1} L -10.886, -10.916, 10.932 
{ c4*   g a 3  M1} L -10.168, -10.578, 9.646 
{ o4*   g a 3  M1} L -10.174, -9.138, 9.393 
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{ o3*   g a 3  M1} L -8.423, -11.174, 8.162 
{ c3*   g a 3  M1} P -8.681, -10.947, 9.534 { c2*   g a 3  M1} L -7.986, -9.689, 10.056 
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{ c2*   g a 3  M1} P -7.986, -9.689, 10.056 { c1*   g a 3  M1} L -8.863, -8.580, 9.495 
{ c1*   g a 3  M1} P -8.863, -8.580, 9.495 { c2*   g a 3  M1} L -7.986, -9.689, 10.056 
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{ o5*   g a 4  M1} L -6.425, -10.671, 6.736 
{ c5*   g a 4  M1} L -7.136, -10.010, 5.667 
{ c4*   g a 4  M1} L -6.453, -8.679, 5.378 
{ o4*   g a 4  M1} L -6.805, -7.709, 6.414 
{ c4*   g a 4  M1} P -6.453, -8.679, 5.378 { c3*   g a 4  M1} L -4.924, -8.765, 5.389 
{ o3*   g a 4  M1} L -4.350, -7.936, 4.397 
{ c3*   g a 4  M1} P -4.924, -8.765, 5.389 { c2*   g a 4  M1} L -4.559, -8.232, 6.774 
{ o4*   g a 4  M1} P -6.805, -7.709, 6.414 { c1*   g a 4  M1} L -5.614, -7.116, 6.887 
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{ c1*   g a 4  M1} P -5.614, -7.116, 6.887 { c2*   g a 4  M1} L -4.559, -8.232, 6.774 
{ o3*   g a 4  M1} P -4.350, -7.936, 4.397 { p     g a 5  M1} L -3.932, -8.526, 2.953 
{ o5*   g a 5  M1} L -3.986, -7.199, 2.044 
{ c5*   g a 5  M1} L -5.330, -6.914, 1.562 
{ c4*   g a 5  M1} L -5.303, -5.413, 1.347 
{ o4*   g a 5  M1} L -5.344, -4.659, 2.581 
{ c4*   g a 5  M1} P -5.303, -5.413, 1.347 { c3*   g a 5  M1} L -3.975, -5.006, 0.667 
{ o3*   g a 5  M1} L -4.331, -3.958, -0.192 
{ c3*   g a 5  M1} P -3.975, -5.006, 0.667 { c2*   g a 5  M1} L -3.116, -4.574, 1.849 
{ o4*   g a 5  M1} P -5.344, -4.659, 2.581 { c1*   g a 5  M1} L -4.138, -3.909, 2.767 
{ c2*   g a 5  M1} P -3.116, -4.574, 1.849 { c1*   g a 5  M1} L -4.138, -3.909, 2.767 
{ c1*   g a 5  M1} P -4.138, -3.909, 2.767 { c2*   g a 5  M1} L -3.116, -4.574, 1.849 
{ o3*   g a 5  M1} P -4.331, -3.958, -0.192 { p     a a 6  M1} L -3.455, -3.220, -1.299 
{ o5*   a a 6  M1} L -3.414, -1.716, -0.771 
{ c5*   a a 6  M1} L -4.424, -0.955, -0.136 
{ c4*   a a 6  M1} L -3.776, 0.174, 0.666 
{ o4*   a a 6  M1} L -3.518, -0.260, 2.030 
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{ o3*   a a 6  M1} L -2.300, 2.047, 0.114 
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{ c2*   a a 6  M1} P -1.387, 0.158, 1.145 { c1*   a a 6  M1} L -2.226, 0.207, 2.427 
{ c1*   a a 6  M1} P -2.226, 0.207, 2.427 { c2*   a a 6  M1} L -1.387, 0.158, 1.145 
{ o3*   a a 6  M1} P -2.300, 2.047, 0.114 { p     c a 7  M1} L -3.000, 3.080, -0.845 
{ o5*   c a 7  M1} L -1.901, 3.380, -2.000 
{ c5*   c a 7  M1} L -0.550, 3.663, -1.636 
{ c4*   c a 7  M1} L 0.261, 3.977, -2.872 
{ o4*   c a 7  M1} L 0.433, 2.770, -3.666 
{ c4*   c a 7  M1} P 0.261, 3.977, -2.872 { c3*   c a 7  M1} L -0.355, 4.970, -3.854 
{ o3*   c a 7  M1} L 0.740, 5.547, -4.549 
{ c3*   c a 7  M1} P -0.355, 4.970, -3.854 { c2*   c a 7  M1} L -1.145, 4.098, -4.835 
{ o4*   c a 7  M1} P 0.433, 2.770, -3.666 { c1*   c a 7  M1} L -0.205, 2.899, -4.919 
{ c2*   c a 7  M1} P -1.145, 4.098, -4.835 { c1*   c a 7  M1} L -0.205, 2.899, -4.919 
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{ o3*   c a 7  M1} P 0.740, 5.547, -4.549 { p     c a 8  M1} L 0.986, 7.114, -4.595 
{ o5*   c a 8  M1} L -0.274, 7.715, -5.396 
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{ o4*   c a 8  M1} L -2.266, 6.918, -7.331 
{ c4*   c a 8  M1} P -1.509, 8.157, -7.427 { c3*   c a 8  M1} L -2.383, 9.203, -6.725 
{ o3*   c a 8  M1} L -3.232, 9.861, -7.655 
{ c3*   c a 8  M1} P -2.383, 9.203, -6.725 { c2*   c a 8  M1} L -3.218, 8.364, -5.745 
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{ c1*   c a 8  M1} P -3.509, 7.181, -6.659 { c2*   c a 8  M1} L -3.218, 8.364, -5.745 
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{ o4*   g a 9  M1} L -5.088, 8.949, -10.756 
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{ o3*   g a 9  M1} L -6.269, 10.652, -12.786 
{ c3*   g a 9  M1} P -5.448, 11.062, -11.708 { c2*   g a 9  M1} L -6.312, 10.938, -10.444 
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{ o3*   g a 9  M1} P -6.269, 10.652, -12.786 { p     g a 10  M1} L -6.586, 11.676, -13.996 
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{ c5*   g a 10  M1} L -7.274, 9.515, -15.267 
{ c4*   g a 10  M1} L -8.487, 8.604, -15.233 
{ o4*   g a 10  M1} L -8.799, 8.198, -13.858 
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{ c2*   g a 10  M1} P -10.231, 9.961, -14.423 { c1*   g a 10  M1} L -10.047, 8.763, -13.478 
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{ c2    c a 1  M1} L -18.269, -4.161, 10.428
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{ c5    c a 1  M1} L -18.890, -1.575, 11.195
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{ n4    c a 2  M1} L -14.724, -1.333, 11.618
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{ c5    c a 2  M1} L -13.678, -2.844, 13.152
{ p     c a 2  M1} P -16.022, -7.428, 15.879 { op1   c a 2  M1} L -16.958, -8.553, 16.151
{ p     c a 2  M1} P -16.022, -7.428, 15.879 { op2   c a 2  M1} L -15.614, -6.585, 17.005
{ c1*   g a 3  M1} P -8.863, -8.580, 9.495 { n9    g a 3  M1} L -9.030, -7.358, 10.330
{ c8    g a 3  M1} L -8.737, -7.149, 11.656
{ n7    g a 3  M1} L -9.058, -5.958, 12.104
{ c5    g a 3  M1} L -9.621, -5.319, 10.997
{ c6    g a 3  M1} L -10.149, -4.012, 10.858
{ o6    g a 3  M1} L -10.263, -3.094, 11.666
{ c6    g a 3  M1} P -10.149, -4.012, 10.858 { n1    g a 3  M1} L -10.624, -3.772, 9.559
{ c2    g a 3  M1} L -10.578, -4.701, 8.537
{ n2    g a 3  M1} L -11.060, -4.284, 7.364
{ c2    g a 3  M1} P -10.578, -4.701, 8.537 { n3    g a 3  M1} L -10.069, -5.925, 8.670
{ c4    g a 3  M1} L -9.599, -6.168, 9.913
{ c4    g a 3  M1} P -9.599, -6.168, 9.913 { c5    g a 3  M1} L -9.621, -5.319, 10.997
{ n9    g a 3  M1} P -9.030, -7.358, 10.330 { c4    g a 3  M1} L -9.599, -6.168, 9.913
{ c5    g a 3  M1} L -9.621, -5.319, 10.997
{ p     g a 3  M1} P -10.396, -10.068, 13.410 { op1   g a 3  M1} L -11.240, -10.939, 14.262
{ p     g a 3  M1} P -10.396, -10.068, 13.410 { op2   g a 3  M1} L -9.123, -9.602, 14.034
{ c5    g a 3  M1} P -9.621, -5.319, 10.997 { c4    g a 3  M1} L -9.599, -6.168, 9.913
{ c4    g a 3  M1} P -9.599, -6.168, 9.913 { c5    g a 3  M1} L -9.621, -5.319, 10.997
{ c4    g a 3  M1} P -9.599, -6.168, 9.913 { n3    g a 3  M1} L -10.069, -5.925, 8.670
{ c1*   g a 4  M1} P -5.614, -7.116, 6.887 { n9    g a 4  M1} L -5.715, -6.549, 8.251
{ c8    g a 4  M1} L -5.194, -7.038, 9.424
{ n7    g a 4  M1} L -5.422, -6.263, 10.462
{ c5    g a 4  M1} L -6.095, -5.165, 9.936
{ c6    g a 4  M1} L -6.590, -4.005, 10.574
{ o6    g a 4  M1} L -6.590, -3.652, 11.755
{ c6    g a 4  M1} P -6.590, -4.005, 10.574 { n1    g a 4  M1} L -7.219, -3.158, 9.642
{ c2    g a 4  M1} L -7.357, -3.392, 8.292
{ n2    g a 4  M1} L -7.997, -2.415, 7.647
{ c2    g a 4  M1} P -7.357, -3.392, 8.292 { n3    g a 4  M1} L -6.892, -4.484, 7.699
{ c4    g a 4  M1} L -6.281, -5.326, 8.581
{ c4    g a 4  M1} P -6.281, -5.326, 8.581 { c5    g a 4  M1} L -6.095, -5.165, 9.936
{ n9    g a 4  M1} P -5.715, -6.549, 8.251 { c4    g a 4  M1} L -6.281, -5.326, 8.581
{ c5    g a 4  M1} L -6.095, -5.165, 9.936
{ p     g a 4  M1} P -7.151, -11.878, 7.509 { op1   g a 4  M1} L -7.585, -12.876, 6.494
{ p     g a 4  M1} P -7.151, -11.878, 7.509 { op2   g a 4  M1} L -6.210, -12.397, 8.531
{ c5    g a 4  M1} P -6.095, -5.165, 9.936 { c4    g a 4  M1} L -6.281, -5.326, 8.581
{ c4    g a 4  M1} P -6.281, -5.326, 8.581 { c5    g a 4  M1} L -6.095, -5.165, 9.936
{ c4    g a 4  M1} P -6.281, -5.326, 8.581 { n3    g a 4  M1} L -6.892, -4.484, 7.699
{ c1*   g a 5  M1} P -4.138, -3.909, 2.767 { n9    g a 5  M1} L -3.840, -3.973, 4.219
{ c8    g a 5  M1} L -3.152, -4.992, 4.867
{ n7    g a 5  M1} L -3.065, -4.830, 6.165
{ c5    g a 5  M1} L -3.734, -3.625, 6.406
{ c6    g a 5  M1} L -3.968, -2.949, 7.632
{ o6    g a 5  M1} L -3.610, -3.232, 8.780
{ c6    g a 5  M1} P -3.968, -2.949, 7.632 { n1    g a 5  M1} L -4.707, -1.775, 7.452
{ c2    g a 5  M1} L -5.157, -1.326, 6.224
{ n2    g a 5  M1} L -5.833, -0.176, 6.280
{ c2    g a 5  M1} P -5.157, -1.326, 6.224 { n3    g a 5  M1} L -4.922, -1.951, 5.067
{ c4    g a 5  M1} L -4.205, -3.096, 5.220
{ c4    g a 5  M1} P -4.205, -3.096, 5.220 { c5    g a 5  M1} L -3.734, -3.625, 6.406
{ n9    g a 5  M1} P -3.840, -3.973, 4.219 { c4    g a 5  M1} L -4.205, -3.096, 5.220
{ c5    g a 5  M1} L -3.734, -3.625, 6.406
{ p     g a 5  M1} P -3.932, -8.526, 2.953 { op1   g a 5  M1} L -4.996, -9.408, 2.405
{ p     g a 5  M1} P -3.932, -8.526, 2.953 { op2   g a 5  M1} L -2.556, -9.056, 2.949
{ c5    g a 5  M1} P -3.734, -3.625, 6.406 { c4    g a 5  M1} L -4.205, -3.096, 5.220
{ c4    g a 5  M1} P -4.205, -3.096, 5.220 { c5    g a 5  M1} L -3.734, -3.625, 6.406
{ c4    g a 5  M1} P -4.205, -3.096, 5.220 { n3    g a 5  M1} L -4.922, -1.951, 5.067
{ c1*   a a 6  M1} P -2.226, 0.207, 2.427 { n9    a a 6  M1} L -1.689, -0.686, 3.486
{ c8    a a 6  M1} L -1.008, -1.869, 3.299
{ n7    a a 6  M1} L -0.659, -2.462, 4.393
{ c5    a a 6  M1} L -1.107, -1.591, 5.383
{ c6    a a 6  M1} L -1.035, -1.657, 6.791
{ n6    a a 6  M1} L -0.452, -2.688, 7.423
{ c6    a a 6  M1} P -1.035, -1.657, 6.791 { n1    a a 6  M1} L -1.598, -0.667, 7.490
{ c2    a a 6  M1} L -2.204, 0.335, 6.835
{ n3    a a 6  M1} L -2.313, 0.493, 5.536
{ c4    a a 6  M1} L -1.752, -0.519, 4.845
{ c4    a a 6  M1} P -1.752, -0.519, 4.845 { c5    a a 6  M1} L -1.107, -1.591, 5.383
{ n9    a a 6  M1} P -1.689, -0.686, 3.486 { c4    a a 6  M1} L -1.752, -0.519, 4.845
{ c5    a a 6  M1} L -1.107, -1.591, 5.383
{ p     a a 6  M1} P -3.455, -3.220, -1.299 { op1   a a 6  M1} L -4.258, -3.179, -2.575
{ p     a a 6  M1} P -3.455, -3.220, -1.299 { op2   a a 6  M1} L -2.109, -3.810, -1.411
{ c5    a a 6  M1} P -1.107, -1.591, 5.383 { c4    a a 6  M1} L -1.752, -0.519, 4.845
{ c4    a a 6  M1} P -1.752, -0.519, 4.845 { c5    a a 6  M1} L -1.107, -1.591, 5.383
{ c4    a a 6  M1} P -1.752, -0.519, 4.845 { n3    a a 6  M1} L -2.313, 0.493, 5.536
{ c1*   c a 7  M1} P -0.205, 2.899, -4.919 { n1    c a 7  M1} L -0.871, 1.600, -5.178
{ c2    c a 7  M1} L -1.042, 1.248, -6.526
{ o2    c a 7  M1} L -0.633, 2.055, -7.375
{ c2    c a 7  M1} P -1.042, 1.248, -6.526 { n3    c a 7  M1} L -1.646, 0.077, -6.810
{ c4    c a 7  M1} L -2.060, -0.707, -5.813
{ n4    c a 7  M1} L -2.649, -1.856, -6.108
{ c4    c a 7  M1} P -2.060, -0.707, -5.813 { c5    c a 7  M1} L -1.871, -0.371, -4.430
{ c6    c a 7  M1} L -1.276, 0.815, -4.150
{ c6    c a 7  M1} P -1.276, 0.815, -4.150 { c5    c a 7  M1} L -1.871, -0.371, -4.430
{ n1    c a 7  M1} P -0.871, 1.600, -5.178 { c6    c a 7  M1} L -1.276, 0.815, -4.150
{ c5    c a 7  M1} L -1.871, -0.371, -4.430
{ p     c a 7  M1} P -3.000, 3.080, -0.845 { op1   c a 7  M1} L -3.207, 4.365, -0.164
{ p     c a 7  M1} P -3.000, 3.080, -0.845 { op2   c a 7  M1} L -4.137, 2.428, -1.554
{ c1*   c a 8  M1} P -3.509, 7.181, -6.659 { n1    c a 8  M1} L -3.934, 5.952, -5.955
{ c2    c a 8  M1} L -4.225, 4.857, -6.767
{ o2    c a 8  M1} L -4.108, 5.058, -7.975
{ c2    c a 8  M1} P -4.225, 4.857, -6.767 { n3    c a 8  M1} L -4.648, 3.690, -6.226
{ c4    c a 8  M1} L -4.723, 3.599, -4.896
{ n4    c a 8  M1} L -5.114, 2.447, -4.371
{ c4    c a 8  M1} P -4.723, 3.599, -4.896 { c5    c a 8  M1} L -4.454, 4.714, -4.039
{ c6    c a 8  M1} L -4.061, 5.881, -4.610
{ c6    c a 8  M1} P -4.061, 5.881, -4.610 { c5    c a 8  M1} L -4.454, 4.714, -4.039
{ n1    c a 8  M1} P -3.934, 5.952, -5.955 { c6    c a 8  M1} L -4.061, 5.881, -4.610
{ c5    c a 8  M1} L -4.454, 4.714, -4.039
{ p     c a 8  M1} P 0.986, 7.114, -4.595 { op1   c a 8  M1} L 2.197, 7.330, -5.449
{ p     c a 8  M1} P 0.986, 7.114, -4.595 { op2   c a 8  M1} L 1.011, 7.747, -3.267
{ c1*   g a 9  M1} P -6.382, 9.413, -10.366 { n9    g a 9  M1} L -6.620, 8.897, -8.996
{ c8    g a 9  M1} L -6.481, 9.542, -7.784
{ n7    g a 9  M1} L -6.712, 8.771, -6.753
{ c5    g a 9  M1} L -7.036, 7.538, -7.324
{ c6    g a 9  M1} L -7.382, 6.297, -6.735
{ o6    g a 9  M1} L -7.500, 6.015, -5.555
{ c6    g a 9  M1} P -7.382, 6.297, -6.735 { n1    g a 9  M1} L -7.615, 5.302, -7.693
{ c2    g a 9  M1} L -7.506, 5.468, -9.058
{ n2    g a 9  M1} L -7.757, 4.397, -9.818
{ c2    g a 9  M1} P -7.506, 5.468, -9.058 { n3    g a 9  M1} L -7.184, 6.630, -9.611
{ c4    g a 9  M1} L -6.956, 7.604, -8.696
{ c4    g a 9  M1} P -6.956, 7.604, -8.696 { c5    g a 9  M1} L -7.036, 7.538, -7.324
{ n9    g a 9  M1} P -6.620, 8.897, -8.996 { c4    g a 9  M1} L -6.956, 7.604, -8.696
{ c5    g a 9  M1} L -7.036, 7.538, -7.324
{ p     g a 9  M1} P -2.765, 11.251, -8.285 { op1   g a 9  M1} L -1.297, 11.205, -8.583
{ p     g a 9  M1} P -2.765, 11.251, -8.285 { op2   g a 9  M1} L -3.145, 12.397, -7.422
{ c5    g a 9  M1} P -7.036, 7.538, -7.324 { c4    g a 9  M1} L -6.956, 7.604, -8.696
{ c4    g a 9  M1} P -6.956, 7.604, -8.696 { c5    g a 9  M1} L -7.036, 7.538, -7.324
{ c4    g a 9  M1} P -6.956, 7.604, -8.696 { n3    g a 9  M1} L -7.184, 6.630, -9.611
{ c1*   g a 10  M1} P -10.047, 8.763, -13.478 { n9    g a 10  M1} L -10.000, 9.113, -12.038
{ c8    g a 10  M1} L -9.710, 10.349, -11.502
{ n7    g a 10  M1} L -9.734, 10.390, -10.194
{ c5    g a 10  M1} L -10.062, 9.080, -9.847
{ c6    g a 10  M1} L -10.233, 8.533, -8.549
{ o6    g a 10  M1} L -10.103, 9.097, -7.466
{ c6    g a 10  M1} P -10.233, 8.533, -8.549 { n1    g a 10  M1} L -10.565, 7.184, -8.634
{ c2    g a 10  M1} L -10.721, 6.453, -9.786
{ n2    g a 10  M1} L -11.044, 5.173, -9.609
{ c2    g a 10  M1} P -10.721, 6.453, -9.786 { n3    g a 10  M1} L -10.570, 6.982, -11.002
{ c4    g a 10  M1} L -10.243, 8.302, -10.958
{ c4    g a 10  M1} P -10.243, 8.302, -10.958 { c5    g a 10  M1} L -10.062, 9.080, -9.847
{ n9    g a 10  M1} P -10.000, 9.113, -12.038 { c4    g a 10  M1} L -10.243, 8.302, -10.958
{ c5    g a 10  M1} L -10.062, 9.080, -9.847
{ p     g a 10  M1} P -6.586, 11.676, -13.996 { op1   g a 10  M1} L -5.347, 11.811, -14.798
{ p     g a 10  M1} P -6.586, 11.676, -13.996 { op2   g a 10  M1} L -7.163, 12.930, -13.491
{ c5    g a 10  M1} P -10.062, 9.080, -9.847 { c4    g a 10  M1} L -10.243, 8.302, -10.958
{ c4    g a 10  M1} P -10.243, 8.302, -10.958 { c5    g a 10  M1} L -10.062, 9.080, -9.847
{ c4    g a 10  M1} P -10.243, 8.302, -10.958 { n3    g a 10  M1} L -10.570, 6.982, -11.002

@subgroup {Red Ribbon}  dominant 
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   c a 2 } P  -16.831, -8.273, 14.939
{R1   c a 2 } L  -16.590, -8.385, 14.828
{R1   c a 2 } L  -15.958, -8.675, 14.510
{R1   c a 2 } L  -15.072, -9.074, 14.011
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R2   c a 2 } P  -15.213, -6.583, 16.819
{R2   c a 2 } L  -14.970, -6.699, 16.706
{R2   c a 2 } L  -14.319, -7.016, 16.379
{R2   c a 2 } L  -13.382, -7.487, 15.856
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   c a 2 } P  -16.831, -8.273, 14.939
{R2   c a 2 } L  -15.213, -6.583, 16.819
{R1   c a 2 } P  -16.590, -8.385, 14.828
{R2   c a 2 } L  -14.970, -6.699, 16.706
{R1   c a 2 } P  -15.958, -8.675, 14.510
{R2   c a 2 } L  -14.319, -7.016, 16.379
{R1   c a 2 } P  -15.072, -9.074, 14.011
{R2   c a 2 } L  -13.382, -7.487, 15.856
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   g a 3 }P -15.072, -9.074, 14.011
{R1   g a 3 } L  -14.068, -9.512, 13.357
{R1   g a 3 } L  -13.061, -9.925, 12.570
{R1   g a 3 } L  -12.078, -10.276, 11.663
{R1   g a 3 } L  -11.124, -10.532, 10.649
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   g a 3 }P -13.382, -7.487, 15.856
{R2   g a 3 } L  -12.278, -8.066, 15.154
{R2   g a 3 } L  -11.115, -8.702, 14.293
{R2   g a 3 } L  -9.946, -9.330, 13.300
{R2   g a 3 } L  -8.809, -9.881, 12.204
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   g a 3 } P  -15.072, -9.074, 14.011
{R2   g a 3 } L  -13.382, -7.487, 15.856
{R1   g a 3 } P  -14.068, -9.512, 13.357
{R2   g a 3 } L  -12.278, -8.066, 15.154
{R1   g a 3 } P  -13.061, -9.925, 12.570
{R2   g a 3 } L  -11.115, -8.702, 14.293
{R1   g a 3 } P  -12.078, -10.276, 11.663
{R2   g a 3 } L  -9.946, -9.330, 13.300
{R1   g a 3 } P  -11.124, -10.532, 10.649
{R2   g a 3 } L  -8.809, -9.881, 12.204
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   g a 4 }P -11.124, -10.532, 10.649
{R1   g a 4 } L  -10.204, -10.662, 9.537
{R1   g a 4 } L  -9.327, -10.635, 8.346
{R1   g a 4 } L  -8.504, -10.441, 7.115
{R1   g a 4 } L  -7.754, -10.068, 5.889
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   g a 4 }P -8.809, -9.881, 12.204
{R2   g a 4 } L  -7.744, -10.286, 11.034
{R2   g a 4 } L  -6.781, -10.485, 9.816
{R2   g a 4 } L  -5.918, -10.461, 8.566
{R2   g a 4 } L  -5.146, -10.205, 7.298
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   g a 4 } P  -11.124, -10.532, 10.649
{R2   g a 4 } L  -8.809, -9.881, 12.204
{R1   g a 4 } P  -10.204, -10.662, 9.537
{R2   g a 4 } L  -7.744, -10.286, 11.034
{R1   g a 4 } P  -9.327, -10.635, 8.346
{R2   g a 4 } L  -6.781, -10.485, 9.816
{R1   g a 4 } P  -8.504, -10.441, 7.115
{R2   g a 4 } L  -5.918, -10.461, 8.566
{R1   g a 4 } P  -7.754, -10.068, 5.889
{R2   g a 4 } L  -5.146, -10.205, 7.298
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   g a 5 }P -7.754, -10.068, 5.889
{R1   g a 5 } L  -7.091, -9.509, 4.715
{R1   g a 5 } L  -6.527, -8.760, 3.631
{R1   g a 5 } L  -6.060, -7.837, 2.653
{R1   g a 5 } L  -5.680, -6.764, 1.791
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   g a 5 }P -5.146, -10.205, 7.298
{R2   g a 5 } L  -4.453, -9.709, 6.022
{R2   g a 5 } L  -3.833, -8.972, 4.758
{R2   g a 5 } L  -3.290, -8.028, 3.544
{R2   g a 5 } L  -2.833, -6.920, 2.422
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   g a 5 } P  -7.754, -10.068, 5.889
{R2   g a 5 } L  -5.146, -10.205, 7.298
{R1   g a 5 } P  -7.091, -9.509, 4.715
{R2   g a 5 } L  -4.453, -9.709, 6.022
{R1   g a 5 } P  -6.527, -8.760, 3.631
{R2   g a 5 } L  -3.833, -8.972, 4.758
{R1   g a 5 } P  -6.060, -7.837, 2.653
{R2   g a 5 } L  -3.290, -8.028, 3.544
{R1   g a 5 } P  -5.680, -6.764, 1.791
{R2   g a 5 } L  -2.833, -6.920, 2.422
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   a a 6 }P -5.680, -6.764, 1.791
{R1   a a 6 } L  -5.380, -5.563, 1.052
{R1   a a 6 } L  -5.146, -4.259, 0.438
{R1   a a 6 } L  -4.933, -2.883, -0.092
{R1   a a 6 } L  -4.693, -1.467, -0.588
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   a a 6 }P -2.833, -6.920, 2.422
{R2   a a 6 } L  -2.467, -5.691, 1.437
{R2   a a 6 } L  -2.193, -4.382, 0.620
{R2   a a 6 } L  -1.972, -3.026, -0.038
{R2   a a 6 } L  -1.756, -1.656, -0.559
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   a a 6 } P  -5.680, -6.764, 1.791
{R2   a a 6 } L  -2.833, -6.920, 2.422
{R1   a a 6 } P  -5.380, -5.563, 1.052
{R2   a a 6 } L  -2.467, -5.691, 1.437
{R1   a a 6 } P  -5.146, -4.259, 0.438
{R2   a a 6 } L  -2.193, -4.382, 0.620
{R1   a a 6 } P  -4.933, -2.883, -0.092
{R2   a a 6 } L  -1.972, -3.026, -0.038
{R1   a a 6 } P  -4.693, -1.467, -0.588
{R2   a a 6 } L  -1.756, -1.656, -0.559
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   c a 7 }P -4.693, -1.467, -0.588
{R1   c a 7 } L  -4.373, -0.047, -1.098
{R1   c a 7 } L  -3.939, 1.347, -1.666
{R1   c a 7 } L  -3.417, 2.687, -2.305
{R1   c a 7 } L  -2.846, 3.946, -3.022
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   c a 7 }P -1.756, -1.656, -0.559
{R2   c a 7 } L  -1.497, -0.305, -0.962
{R2   c a 7 } L  -1.170, 1.001, -1.277
{R2   c a 7 } L  -0.832, 2.268, -1.562
{R2   c a 7 } L  -0.565, 3.509, -1.884
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   c a 7 } P  -4.693, -1.467, -0.588
{R2   c a 7 } L  -1.756, -1.656, -0.559
{R1   c a 7 } P  -4.373, -0.047, -1.098
{R2   c a 7 } L  -1.497, -0.305, -0.962
{R1   c a 7 } P  -3.939, 1.347, -1.666
{R2   c a 7 } L  -1.170, 1.001, -1.277
{R1   c a 7 } P  -3.417, 2.687, -2.305
{R2   c a 7 } L  -0.832, 2.268, -1.562
{R1   c a 7 } P  -2.846, 3.946, -3.022
{R2   c a 7 } L  -0.565, 3.509, -1.884
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   c a 8 }P -2.846, 3.946, -3.022
{R1   c a 8 } L  -2.267, 5.098, -3.822
{R1   c a 8 } L  -1.728, 6.121, -4.707
{R1   c a 8 } L  -1.301, 7.019, -5.659
{R1   c a 8 } L  -1.067, 7.800, -6.658
@vectorlist  {ribbon} color= {nucleicHollidayJM1}   master= {ribbon}  nobutton master= {nucleic}
{  R2   c a 8 }P -0.565, 3.509, -1.884
{R2   c a 8 } L  -0.448, 4.736, -2.309
{R2   c a 8 } L  -0.543, 5.954, -2.890
{R2   c a 8 } L  -0.846, 7.140, -3.628
{R2   c a 8 } L  -1.330, 8.262, -4.511
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   c a 8 } P  -2.846, 3.946, -3.022
{R2   c a 8 } L  -0.565, 3.509, -1.884
{R1   c a 8 } P  -2.267, 5.098, -3.822
{R2   c a 8 } L  -0.448, 4.736, -2.309
{R1   c a 8 } P  -1.728, 6.121, -4.707
{R2   c a 8 } L  -0.543, 5.954, -2.890
{R1   c a 8 } P  -1.301, 7.019, -5.659
{R2   c a 8 } L  -0.846, 7.140, -3.628
{R1   c a 8 } P  -1.067, 7.800, -6.658
{R2   c a 8 } L  -1.330, 8.262, -4.511
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   g a 9 }P -1.067, 7.800, -6.658
{R1   g a 9 } L  -1.107, 8.474, -7.681
{R1   g a 9 } L  -1.468, 9.047, -8.705
{R1   g a 9 } L  -2.067, 9.522, -9.712
{R1   g a 9 } L  -2.788, 9.902, -10.679
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   g a 9 }P -1.330, 8.262, -4.511
{R2   g a 9 } L  -1.973, 9.290, -5.526
{R2   g a 9 } L  -2.743, 10.194, -6.653
{R2   g a 9 } L  -3.583, 10.962, -7.833
{R2   g a 9 } L  -4.427, 11.584, -8.997
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   g a 9 } P  -1.067, 7.800, -6.658
{R2   g a 9 } L  -1.330, 8.262, -4.511
{R1   g a 9 } P  -1.107, 8.474, -7.681
{R2   g a 9 } L  -1.973, 9.290, -5.526
{R1   g a 9 } P  -1.468, 9.047, -8.705
{R2   g a 9 } L  -2.743, 10.194, -6.653
{R1   g a 9 } P  -2.067, 9.522, -9.712
{R2   g a 9 } L  -3.583, 10.962, -7.833
{R1   g a 9 } P  -2.788, 9.902, -10.679
{R2   g a 9 } L  -4.427, 11.584, -8.997
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R1   g a 10 }P -2.788, 9.902, -10.679
{R1   g a 10 } L  -3.517, 10.187, -11.588
{R1   g a 10 } L  -4.156, 10.383, -12.417
{R1   g a 10 } L  -4.685, 10.505, -13.141
{R1   g a 10 } L  -5.716, 10.647, -14.655
@vectorlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{  R2   g a 10 }P -4.427, 11.584, -8.997
{R2   g a 10 } L  -5.209, 12.050, -10.078
{R2   g a 10 } L  -5.876, 12.359, -11.018
{R2   g a 10 } L  -6.419, 12.539, -11.800
{R2   g a 10 } L  -7.456, 12.705, -13.337
@ribbonlist  {ribbon} color= red   master= {ribbon}  nobutton master= {nucleic}
{R1   g a 10 } P  -2.788, 9.902, -10.679
{R2   g a 10 } L  -4.427, 11.584, -8.997
{R1   g a 10 } P  -3.517, 10.187, -11.588
{R2   g a 10 } L  -5.209, 12.050, -10.078
{R1   g a 10 } P  -4.156, 10.383, -12.417
{R2   g a 10 } L  -5.876, 12.359, -11.018
{R1   g a 10 } P  -4.685, 10.505, -13.141
{R2   g a 10 } L  -6.419, 12.539, -11.800
{R1   g a 10 } P  -5.716, 10.647, -14.655
{R2   g a 10 } L  -7.456, 12.705, -13.337

@subgroup {strand 2} dominant
@vectorlist {mc} color= yellowtint  master= {mainchain}
{ o5*   c b 11  M1} P 11.734, 1.982, 1.995 { o5*   c b 11  M1} L 11.734, 1.982, 1.995 
{ c5*   c b 11  M1} L 11.723, 0.805, 2.829 
{ c4*   c b 11  M1} L 12.847, 0.830, 3.845 
{ o4*   c b 11  M1} L 13.224, 2.220, 4.089 
{ c4*   c b 11  M1} P 12.847, 0.830, 3.845 { c3*   c b 11  M1} L 12.503, 0.303, 5.238 
{ o3*   c b 11  M1} L 13.655, -0.038, 5.989 
{ c3*   c b 11  M1} P 12.503, 0.303, 5.238 { c2*   c b 11  M1} L 11.817, 1.518, 5.868 
{ o4*   c b 11  M1} P 13.224, 2.220, 4.089 { c1*   c b 11  M1} L 12.650, 2.655, 5.295 
{ c2*   c b 11  M1} P 11.817, 1.518, 5.868 { c1*   c b 11  M1} L 12.650, 2.655, 5.295 
{ c1*   c b 11  M1} P 12.650, 2.655, 5.295 { c2*   c b 11  M1} L 11.817, 1.518, 5.868 
{ o3*   c b 11  M1} P 13.655, -0.038, 5.989 { p     c b 12  M1} L 13.949, -1.567, 6.412 
{ o5*   c b 12  M1} L 12.802, -1.906, 7.469 
{ c5*   c b 12  M1} L 12.566, -1.067, 8.623 
{ c4*   c b 12  M1} L 11.081, -1.160, 8.956 
{ o4*   c b 12  M1} L 10.379, -0.047, 8.330 
{ c4*   c b 12  M1} P 11.081, -1.160, 8.956 { c3*   c b 12  M1} L 10.389, -2.411, 8.403 
{ o3*   c b 12  M1} L 9.409, -2.849, 9.339 
{ c3*   c b 12  M1} P 10.389, -2.411, 8.403 { c2*   c b 12  M1} L 9.722, -1.903, 7.117 
{ o4*   c b 12  M1} P 10.379, -0.047, 8.330 { c1*   c b 12  M1} L 9.228, -0.566, 7.635 
{ c2*   c b 12  M1} P 9.722, -1.903, 7.117 { c1*   c b 12  M1} L 9.228, -0.566, 7.635 
{ c1*   c b 12  M1} P 9.228, -0.566, 7.635 { c2*   c b 12  M1} L 9.722, -1.903, 7.117 
{ o3*   c b 12  M1} P 9.409, -2.849, 9.339 { p     g b 13  M1} L 9.759, -4.097, 10.302 
{ o5*   g b 13  M1} L 8.825, -3.896, 11.576 
{ c5*   g b 13  M1} L 9.156, -2.886, 12.551 
{ c4*   g b 13  M1} L 7.848, -2.237, 12.972 
{ o4*   g b 13  M1} L 7.353, -1.430, 11.859 
{ c4*   g b 13  M1} P 7.848, -2.237, 12.972 { c3*   g b 13  M1} L 6.718, -3.227, 13.289 
{ o3*   g b 13  M1} L 5.803, -2.665, 14.208 
{ c3*   g b 13  M1} P 6.718, -3.227, 13.289 { c2*   g b 13  M1} L 6.034, -3.379, 11.923 
{ o4*   g b 13  M1} P 7.353, -1.430, 11.859 { c1*   g b 13  M1} L 6.070, -1.914, 11.487 
{ c2*   g b 13  M1} P 6.034, -3.379, 11.923 { c1*   g b 13  M1} L 6.070, -1.914, 11.487 
{ c1*   g b 13  M1} P 6.070, -1.914, 11.487 { c2*   g b 13  M1} L 6.034, -3.379, 11.923 
{ o3*   g b 13  M1} P 5.803, -2.665, 14.208 { p     g b 14  M1} L 5.617, -3.294, 15.691 
{ o5*   g b 14  M1} L 4.923, -2.100, 16.499 
{ c5*   g b 14  M1} L 5.539, -0.805, 16.502 
{ c4*   g b 14  M1} L 4.476, 0.248, 16.275 
{ o4*   g b 14  M1} L 4.013, 0.207, 14.898 
{ c4*   g b 14  M1} P 4.476, 0.248, 16.275 { c3*   g b 14  M1} L 3.203, 0.092, 17.101 
{ o3*   g b 14  M1} L 2.688, 1.371, 17.466 
{ c3*   g b 14  M1} P 3.203, 0.092, 17.101 { c2*   g b 14  M1} L 2.254, -0.662, 16.170 
{ o4*   g b 14  M1} P 4.013, 0.207, 14.898 { c1*   g b 14  M1} L 2.624, -0.112, 14.802 
{ c2*   g b 14  M1} P 2.254, -0.662, 16.170 { c1*   g b 14  M1} L 2.624, -0.112, 14.802 
{ c1*   g b 14  M1} P 2.624, -0.112, 14.802 { c2*   g b 14  M1} L 2.254, -0.662, 16.170 
{ o3*   g b 14  M1} P 2.688, 1.371, 17.466 { p     g b 15  M1} L 1.557, 1.477, 18.644 
{ o5*   g b 15  M1} L 0.245, 1.879, 17.802 
{ c5*   g b 15  M1} L 0.378, 3.055, 16.968 
{ c4*   g b 15  M1} L -0.822, 3.119, 16.066 
{ o4*   g b 15  M1} L -0.661, 2.231, 14.923 
{ c4*   g b 15  M1} P -0.822, 3.119, 16.066 { c3*   g b 15  M1} L -2.114, 2.616, 16.730 
{ o3*   g b 15  M1} L -3.167, 3.319, 16.093 
{ c3*   g b 15  M1} P -2.114, 2.616, 16.730 { c2*   g b 15  M1} L -2.192, 1.148, 16.283 
{ o4*   g b 15  M1} P -0.661, 2.231, 14.923 { c1*   g b 15  M1} L -1.827, 1.416, 14.809 
{ c2*   g b 15  M1} P -2.192, 1.148, 16.283 { c1*   g b 15  M1} L -1.827, 1.416, 14.809 
{ c1*   g b 15  M1} P -1.827, 1.416, 14.809 { c2*   g b 15  M1} L -2.192, 1.148, 16.283 
{ o3*   g b 15  M1} P -3.167, 3.319, 16.093 { p     a b 16  M1} L -4.453, 3.736, 16.950 
{ o5*   a b 16  M1} L -5.275, 4.746, 16.014 
{ c5*   a b 16  M1} L -4.524, 5.840, 15.406 
{ c4*   a b 16  M1} L -4.994, 5.926, 13.965 
{ o4*   a b 16  M1} L -4.554, 4.771, 13.204 
{ c4*   a b 16  M1} P -4.994, 5.926, 13.965 { c3*   a b 16  M1} L -6.525, 5.935, 13.852 
{ o3*   a b 16  M1} L -6.896, 6.864, 12.853 
{ c3*   a b 16  M1} P -6.525, 5.935, 13.852 { c2*   a b 16  M1} L -6.869, 4.492, 13.489 
{ o4*   a b 16  M1} P -4.554, 4.771, 13.204 { c1*   a b 16  M1} L -5.670, 4.126, 12.605 
{ c2*   a b 16  M1} P -6.869, 4.492, 13.489 { c1*   a b 16  M1} L -5.670, 4.126, 12.605 
{ c1*   a b 16  M1} P -5.670, 4.126, 12.605 { c2*   a b 16  M1} L -6.869, 4.492, 13.489 
{ o3*   a b 16  M1} P -6.896, 6.864, 12.853 { p     c b 17  M1} L -8.417, 7.192, 12.456 
{ o5*   c b 17  M1} L -8.704, 6.064, 11.340 
{ c5*   c b 17  M1} L -7.989, 6.269, 10.090 
{ c4*   c b 17  M1} L -8.239, 5.085, 9.180 
{ o4*   c b 17  M1} L -7.757, 3.852, 9.776 
{ c4*   c b 17  M1} P -8.239, 5.085, 9.180 { c3*   c b 17  M1} L -9.724, 4.842, 8.909 
{ o3*   c b 17  M1} L -10.017, 5.117, 7.549 
{ c3*   c b 17  M1} P -9.724, 4.842, 8.909 { c2*   c b 17  M1} L -9.984, 3.367, 9.181 
{ o4*   c b 17  M1} P -7.757, 3.852, 9.776 { c1*   c b 17  M1} L -8.584, 2.797, 9.282 
{ c2*   c b 17  M1} P -9.984, 3.367, 9.181 { c1*   c b 17  M1} L -8.584, 2.797, 9.282 
{ c1*   c b 17  M1} P -8.584, 2.797, 9.282 { c2*   c b 17  M1} L -9.984, 3.367, 9.181 
{ o3*   c b 17  M1} P -10.017, 5.117, 7.549 { p     c b 18  M1} L -11.490, 5.636, 7.109 
{ o5*   c b 18  M1} L -12.143, 4.285, 6.560 
{ c5*   c b 18  M1} L -11.611, 3.691, 5.359 
{ c4*   c b 18  M1} L -12.402, 2.430, 5.071 
{ o4*   c b 18  M1} L -12.069, 1.427, 6.070 
{ c4*   c b 18  M1} P -12.402, 2.430, 5.071 { c3*   c b 18  M1} L -13.925, 2.598, 5.153 
{ o3*   c b 18  M1} L -14.590, 1.778, 4.195 
{ c3*   c b 18  M1} P -13.925, 2.598, 5.153 { c2*   c b 18  M1} L -14.293, 2.112, 6.563 
{ o4*   c b 18  M1} P -12.069, 1.427, 6.070 { c1*   c b 18  M1} L -13.262, 1.009, 6.748 
{ c2*   c b 18  M1} P -14.293, 2.112, 6.563 { c1*   c b 18  M1} L -13.262, 1.009, 6.748 
{ c1*   c b 18  M1} P -13.262, 1.009, 6.748 { c2*   c b 18  M1} L -14.293, 2.112, 6.563 
{ o3*   c b 18  M1} P -14.590, 1.778, 4.195 { p     g b 19  M1} L -15.167, 2.505, 2.840 
{ o5*   g b 19  M1} L -15.478, 1.232, 1.932 
{ c5*   g b 19  M1} L -14.395, 0.383, 1.540 
{ c4*   g b 19  M1} L -14.626, -1.097, 1.638 
{ o4*   g b 19  M1} L -14.692, -1.599, 3.016 
{ c4*   g b 19  M1} P -14.626, -1.097, 1.638 { c3*   g b 19  M1} L -15.922, -1.690, 1.066 
{ o3*   g b 19  M1} L -15.748, -3.095, 0.947 
{ c3*   g b 19  M1} P -15.922, -1.690, 1.066 { c2*   g b 19  M1} L -16.895, -1.426, 2.229 
{ o4*   g b 19  M1} P -14.692, -1.599, 3.016 { c1*   g b 19  M1} L -16.032, -1.964, 3.371 
{ c2*   g b 19  M1} P -16.895, -1.426, 2.229 { c1*   g b 19  M1} L -16.032, -1.964, 3.371 
{ c1*   g b 19  M1} P -16.032, -1.964, 3.371 { c2*   g b 19  M1} L -16.895, -1.426, 2.229 
{ o3*   g b 19  M1} P -15.748, -3.095, 0.947 { p     g b 20  M1} L -16.109, -3.870, -0.415 
{ o5*   g b 20  M1} L -16.014, -5.414, -0.056 
{ c5*   g b 20  M1} L -14.803, -6.004, 0.434 
{ c4*   g b 20  M1} L -15.081, -7.321, 1.138 
{ o4*   g b 20  M1} L -15.580, -7.080, 2.485 
{ c4*   g b 20  M1} P -15.081, -7.321, 1.138 { c3*   g b 20  M1} L -16.187, -8.190, 0.526 
{ o3*   g b 20  M1} L -16.110, -9.517, 1.021 
{ c3*   g b 20  M1} P -16.187, -8.190, 0.526 { c2*   g b 20  M1} L -17.446, -7.516, 1.081 
{ o4*   g b 20  M1} P -15.580, -7.080, 2.485 { c1*   g b 20  M1} L -16.994, -7.230, 2.524 
{ c2*   g b 20  M1} P -17.446, -7.516, 1.081 { c1*   g b 20  M1} L -16.994, -7.230, 2.524 
{ c1*   g b 20  M1} P -16.994, -7.230, 2.524 { c2*   g b 20  M1} L -17.446, -7.516, 1.081 
@vectorlist {sc} color= cyan  master= {sidechain} 
{ c1*   c b 11  M1} P 12.650, 2.655, 5.295 { n1    c b 11  M1} L 11.917, 3.924, 5.071
{ c2    c b 11  M1} L 11.655, 4.591, 6.275
{ o2    c b 11  M1} L 12.079, 4.000, 7.285
{ c2    c b 11  M1} P 11.655, 4.591, 6.275 { n3    c b 11  M1} L 11.011, 5.771, 6.240
{ c4    c b 11  M1} L 10.620, 6.288, 5.067
{ n4    c b 11  M1} L 9.986, 7.450, 5.100
{ c4    c b 11  M1} P 10.620, 6.288, 5.067 { c5    c b 11  M1} L 10.870, 5.626, 3.811
{ c6    c b 11  M1} L 11.537, 4.438, 3.883
{ c6    c b 11  M1} P 11.537, 4.438, 3.883 { c5    c b 11  M1} L 10.870, 5.626, 3.811
{ n1    c b 11  M1} P 11.917, 3.924, 5.071 { c6    c b 11  M1} L 11.537, 4.438, 3.883
{ c5    c b 11  M1} L 10.870, 5.626, 3.811
{ c1*   c b 12  M1} P 9.228, -0.566, 7.635 { n1    c b 12  M1} L 8.806, 0.486, 6.693
{ c2    c b 12  M1} L 8.475, 1.692, 7.327
{ o2    c b 12  M1} L 8.528, 1.703, 8.561
{ c2    c b 12  M1} P 8.475, 1.692, 7.327 { n3    c b 12  M1} L 8.102, 2.754, 6.581
{ c4    c b 12  M1} L 8.006, 2.643, 5.247
{ n4    c b 12  M1} L 7.636, 3.727, 4.580
{ c4    c b 12  M1} P 8.006, 2.643, 5.247 { c5    c b 12  M1} L 8.343, 1.432, 4.573
{ c6    c b 12  M1} L 8.733, 0.380, 5.347
{ c6    c b 12  M1} P 8.733, 0.380, 5.347 { c5    c b 12  M1} L 8.343, 1.432, 4.573
{ n1    c b 12  M1} P 8.806, 0.486, 6.693 { c6    c b 12  M1} L 8.733, 0.380, 5.347
{ c5    c b 12  M1} L 8.343, 1.432, 4.573
{ p     c b 12  M1} P 13.949, -1.567, 6.412 { op1   c b 12  M1} L 15.281, -1.652, 7.054
{ p     c b 12  M1} P 13.949, -1.567, 6.412 { op2   c b 12  M1} L 13.746, -2.466, 5.242
{ c1*   g b 13  M1} P 6.070, -1.914, 11.487 { n9    g b 13  M1} L 5.904, -1.709, 10.033
{ c8    g b 13  M1} L 6.009, -2.605, 8.991
{ n7    g b 13  M1} L 5.782, -2.072, 7.808
{ c5    g b 13  M1} L 5.542, -0.734, 8.112
{ c6    g b 13  M1} L 5.243, 0.350, 7.241
{ o6    g b 13  M1} L 5.164, 0.277, 6.023
{ c6    g b 13  M1} P 5.243, 0.350, 7.241 { n1    g b 13  M1} L 5.072, 1.533, 7.950
{ c2    g b 13  M1} L 5.165, 1.682, 9.328
{ n2    g b 13  M1} L 4.974, 2.903, 9.842
{ c2    g b 13  M1} P 5.165, 1.682, 9.328 { n3    g b 13  M1} L 5.431, 0.658, 10.134
{ c4    g b 13  M1} L 5.635, -0.492, 9.451
{ c4    g b 13  M1} P 5.635, -0.492, 9.451 { c5    g b 13  M1} L 5.542, -0.734, 8.112
{ n9    g b 13  M1} P 5.904, -1.709, 10.033 { c4    g b