Computer Science 590.01
Topics in Computational Structural Biology

1. Here is a useful bibliography of papers (and PDFs) in the area of this course.

2. Whitepaper on Advanced Computational Structural Genomics (read the long version, not the "lite" version).
3. Fast detection of common substructure in proteins, P. Chew, K. Kedem, J. Kleinberg, and D. Huttenlocher (RECOMB'99).
4. Rick Lathrop Lab Other papers we may read include:
5. Date: TBA
   
   • Presenting: TBA
     Protein Similarity
     Reading:
     • Protein Similarity from Knot Theory and Geometric Convolution
       CMU-CS-03-181 by Michael A. Erdmann
       J Comput Biol. 2005 Jul-Aug;12(6):609-37.

Some Useful References for the Course

Protein Science

• Introduction to Protein Structure, Branden, C. and Tooze, J. (1991) Garland Publishing, New York
• Proteins, Creighton, T.E. (1993) 2nd edition, W.H. Freeman & Co., New York
• Principles of Protein Structure, Schulz, G.E. and Schirmer, R.H. (1979) Springer-Verlag, New York
• Protein Structure - New Approaches to Disease and Therapy, Perutz, M. (1992) W.H. Freeman & Co., New York
• Enzyme Structure and Mechanism, Fersht, A.R. (1976) 2nd ed., pub. W.H.Freeman & Co., New York

Biochemistry

• Biochemistry, Stryer, L., (1995) 4th edition, W.H. Freeman & Co., New York
• Biochemistry, Voet, D. and Voet, J.G. (1995) 2nd edition, John Wiley & Sons, New York
• Principles of Biochemistry, Zubay, G.L., Parson, W.W. and Vance, D.E. (1995) Wm. C. Brown, Dubuque, Iowa

Cell Biology

• Molecular Cell Biology, Darnell, J., Lodish, H. and Baltimore, D. (1995) 3rd edition, W.H. Freeman & Co., New York
• Molecular Biology of The Cell, Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K. and Watson, J.D. (1994) 3rd edition, Garland Publishing, New York

Hypertextbooks