Protein Similarity from Knot Theory and Geometric Convolution CMU-CS-03-181 by
Michael A. Erdmann J Comput Biol. 2005 Jul-Aug;12(6):609-37.
Some Useful References for the Course
Protein Science
Introduction to Protein Structure, Branden, C. and Tooze, J. (1991) Garland
Publishing, New York
Proteins, Creighton, T.E. (1993) 2nd edition, W.H. Freeman & Co., New York
Principles of Protein Structure, Schulz, G.E. and Schirmer, R.H. (1979) Springer-Verlag, New York
Protein Structure - New Approaches to Disease and Therapy, Perutz, M. (1992) W.H. Freeman & Co., New York
Enzyme Structure and Mechanism, Fersht, A.R. (1976) 2nd ed., pub. W.H.Freeman & Co., New York
Biochemistry
Biochemistry, Stryer, L., (1995) 4th edition, W.H. Freeman & Co., New York
Biochemistry, Voet, D. and Voet, J.G. (1995) 2nd edition, John Wiley & Sons, New York
Principles of Biochemistry, Zubay, G.L., Parson, W.W. and Vance, D.E. (1995) Wm. C. Brown, Dubuque, Iowa
Cell Biology
Molecular Cell Biology, Darnell, J., Lodish, H. and Baltimore, D. (1995) 3rd edition,
W.H. Freeman & Co., New York
Molecular Biology of The Cell, Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K. and Watson, J.D.
(1994) 3rd edition, Garland Publishing, New York
Hypertextbooks
BioComputing, for the VSNS-Biocomputing Division Course