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NVR-BIP Software

Nuclear Vector Replacement (NVR) with Binary Integer Programming (BIP)

Name of program: NVR-BIP (Project Information)

Code authors: Chris Langmead, Mehmet Serkan Apaydın, Nick Patrick, Bülent Çatay

Copyright: Copyright © 2010 Mehmet Serkan Apaydın, Bülent Çatay, Nick Patrick and Bruce R. Donald.

Description: This is the NVR version which applies binary integer programming to solve the assignments corresponding to the optimum of NVR's scoring function.

Distribution Information: The NVR-BIP distribution contains the Matlab files to prepare the input files to be ran on IBM ILOG CPLEX as well as the OPL input files and sample excel files.

References:

  1. Mehmet Serkan Apaydın, Bülent Çatay, Nick Patrick and Bruce R. Donald. "NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments."The Computer Journal, 2010; Advance Access: doi:10.1093/comjnl/bxp120. [PDF]

Copyright information: Software is made available through the Gnu Public License. If you use or publish any results derived from the use of this program please cite the reference above.

Download Tar file: Code Distribution