Computer Science - Duke University

Alexander Hartemink

Alexander F. Hehmeyer Associate Professor of Computer Science

Faculty Group: Artificial Intelligence

Email	amink at cs.duke.edu
Office	D239 LSRC
Phone	(919) 660-6514
Fax	(919) 660-6519
Web page	http://www.cs.duke.edu/~amink

Education

Ph.D., Electrical Engineering and Computer Science, MIT, 2001
S.M., Electrical Engineering and Computer Science, MIT, 1997
M.Phil., Economics, Oxford University, 1996
B.S., Mathematics, Duke University, 1994
B.S., Physics, Duke University, 1994
A.B., Economics, Duke University, 1994

Honors & Awards

DARPA Computer Science Study Panel, 2008; David and Janet Vaughn Brooks Distinguished Teaching Award, 2007; Alfred P. Sloan Fellowship, 2004; NSF Faculty Early Career Development Award (CAREER), 2004; ORAU Ralph E. Powe Junior Faculty Award, 2002; Merck/MIT Graduate Fellowship in Informatics, 2000; Rhodes Scholarship, 1994; NSF Graduate Research Fellowship, 1994; Julia Dale Prize for Mathematics, 1994; Karl Menger Award for Mathematics, 1993; Barry M. Goldwater Memorial Scholarship, 1992; Presidential Scholarship (White House Commission), 1990; Angier B. Duke Scholarship, 1990; Kalin Award for Mathematics, 1990.

Research

Computational biology, machine learning, Bayesian statistics, systems biology, transcriptional regulation, genomics and epigenomics, computational neurobiology, graphical models, Bayesian networks, classification, feature selection

Selected Publications

Orlando, D., Lin, C., Bernard, A., Wang, J., Socolar, J., Iversen, E., Hartemink, A., & Haase, S. (2008) “Global Control of Cell-Cycle Transcription by Coupled CDK and Network Oscillators.” Nature, 453, 12 June 2008. pp. 944–947.
Gordân, R., Narlikar, L., & Hartemink, A. (2008) “A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery.” Research in Computational Molecular Biology 2008 (RECOMB08). Lecture Notes in Bioinformatics, Vingron, M. & Wong, L., eds. 4955, April 2008. pp. 98–111.
Lüdi, P., Dietrich, F., Weidman, J., Bosko, J., Jirtle, R., & Hartemink, A. (2007) “Computational and Experimental Identification of Novel Human Imprinted Genes.” Genome Research, 17, December 2007. pp. 1723–1730.
Narlikar, L., Gordân, R., & Hartemink, A. (2007) “A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast.” PLoS Computational Biology, 3, November 2007. pp. 2199–2208.
Bernard, A., Vaughn, D., & Hartemink, A. (2007) “Reconstructing the Topology of Protein Complexes.” Research in Computational Molecular Biology 2007 (RECOMB07). Lecture Notes in Bioinformatics, Speed, T. & Huang, H., eds. 4453, April 2007. pp. 32–46.

Extended List of Publications

Publications by Alexander Hartemink