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| Computational Molecular Biology |
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“Computing the writhing number of a polygonal knot,” with H. Edelsbrunner and Y.Wang, Discrete Comp. Geom., 32 (2004), 37–54. |
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“Collision detection for deforming necklaces,” with L. J. Guibas, A. Nguyen, D. Russel, and L.
Zhang, Comput. Geom.: Theory & Appls, 28 (2004), 137–163. |
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“Local search heuristic for rigid protein docking,” with V. Choi, H. Edelsbrunner, and J. Rudolph, in
Proc. 4th Workshop on Algorithms in Bioinformatics, 2004. |
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“Near-linear time approximation algorithms for curve simplification,” with S. Har-Peled, N. Mustafa, and Y. Wang, to appear in Algorithmica. |
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“Coarse and reliable geometric alignment for protein docking,” with Y.Wang, P. Brown, H. Edelsbrunner, and J. Rudolph, to appear in Pacific Sympos. on Biocomput., 2005. |
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“Extreme elevation on a 2-manifold,” with H. Edelsbrunner, J. Harer, and Y. Wang, in 20th Annual Sympos. Comput. Geom., 2004. |
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“Faster approximation algorithm for computing the contact-map overlap,” with N. Mustafa and Y.Wang, submitted to J. Comput. Biol. |
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“Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons,” with Y.
Bilu and R. Kolodny, submitted to 9th Annual Conf. Res. in Comput. Mol.
Biol., 2005. |
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| GIS and Global Change |
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"KBGIS-II: A knowledge-based geographic information
system," with T. Smith, D. Peuquet, and S. Menon, Intl. J.
GIS, 1 (1987), 149-172. |
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"Polygon and connected component intersection
searching," with M. van Kreveld, Algorithmica, 15 (1996),
626-660. |
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"An
Efficient Algorithm for Terrain Simplification," with P. K.
Desikan, in 8th ACM-SIAM Symp. Discrete Algorithms,
1997. |
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"Approximating
Shortest Paths on a Convex Polytope in Three Dimensions," with
S. Har-Peled, M. Sharir, and K. Varadarajan, J.
ACM, 44 (1997), 567-584. |
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"Label placement by maximum independent set
in rectangles," with M. van Kreveld and S. Suri, Comput. Geom.:
Theory & Appls., 11 (1998), 209-218. |
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"I/O-Efficient
algorithms for contour line extraction and planar graph blocking,"
with L. Arge, T.M. Murali, K. Varadarajan, and J.S. Vitter, in 9th
ACM-SIAM Symp. Discrete Algorithms, 1998. |
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"A
simple and efficient algorithm for high quality line labeling,"
with L. Knipping, M. van Kreveld, T. Strijk, and A. Wolff, in Innovations
in GIS VII: GeoComputation, (P. M. Atkinson and D. Martin,
eds.), Taylor and Francis, London, 2000, pp. 147-159. |
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"Efficient algorithms for polygon simplification,"
with K. R. Varadarajan, Discrete and Comput. Geom.,
23 (2000), 273-291. |
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"Approximating shortest paths on a nonconvex polyhedron," with K. Varadarajan, SIAM J. Comput. 30 (2001), 1321-1340. |
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"The extinction debt revisited: Population dynamics in a continuous space model," with M. Dietze, S. Govindarajan, and J. Clark, in Ecological Society of America Annual Meeting, 2001. |
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“Computing
approximate shortest paths on convex polytopes,” with
S. Har-Peled and M. Karia, Algorithmica, 33 (2002), 227–242. |
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"Reporting
all intersecting pairs of polytopes in two and three dimensions,"
with M. de Berg, S. Har-Peled, M. Overmars, M. Sharir, and J. Vahrenhold,
Comput. Geom. 23 (2002), 195-208. |
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“The paradox of species diversity,” with
J. Clark, M. Dietze, and S. Govindarajan, in Ecological Society
of America Annual Meeting, 2003. |
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“A
scalable simulator for forest dynamics,” with S. Govindrajan,
M. Dietze, and J. Clark, in 20th Annual Sympos. Comput.
Geom., 2004. |
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"Near-linear time approximation algorithms for curve simplification," with S. Har-Peled, N. Mustafa, and Y. Wang, to appear in Algorithmica. |
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"A
scalable algorithm for dispersing population," with S.
Govindarajan, M. Dietze, and J. Clark, to appear in J. Intelligent
Information Systems. |
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