Publication Index

Sudheer Sahu, Peng Yin, & John H. Reif (2005) A Self-Assembly Model of DNA Tiles with Time Dependent Glue Strength. Eleventh International Meeting on DNA Computing (DNA11), London, Canada, June 6-9, 2005.
Sungha Park, Peng Yin, Yan Liu, John H. Reif, Thomas H. LaBean, & Hao Yan (2005) Programmable DNA Self-Assemblies for Nanoscale Organization of Ligands and Proteins. Nano Lett., 5, April 2005. pp. 729 - 733.

John H. Reif, Sudheer Sahu, & Peng Yin (2004) Compact Error-Resilient Computational DNA Tiling Assemblies. Tenth International Meeting on DNA Computing (DNA10), Milano, Italy, June 7-10, 2004. Lecture Notes in Computer Science (to appear 2005). Also appeared as invited paper in Foundations of Nanoscience 2004 (FNANO04).
Peng Yin, Bo Guo, Christina Belmore, Will Palmeri, Erik Winfree, Thomas H. LaBean, & John H. Reif (2004) TileSoft: Sequence Optimization Software for Designing DNA Secondary Structures. Poster, Tenth International Meeting on DNA Computing (DNA10), Milano, Italy, June 7-10, 2004. Lecture Notes in Computer Science (to appear 2005)

DNA Nano-Devices

Peng Yin, Sudheer Sahu, Andrew J. Turberfield, & John H. Reif (2005) Autonomous DNA Cellular Automata. Eleventh International Meeting on DNA Computing (DNA11), London, Canada, June 6-9, 2005.

Peng Yin, Hao Yan, Xiaoju G. Daniell, Andrew J. Turberfield, & John H. Reif (2004) A Unidirectional DNA Walker Moving Autonomously Along a Linear Track. Angew. Chem. Int. Ed. 43, September 2004. pp. 4906-4911.

Peng Yin, Andrew J. Turberfield, & John H. Reif (2004) Designs of Autonomous Unidirectional Walking DNA Devices. Tenth International Meeting on DNA Computing (DNA10), Milano, Italy, June 7-10, 2004. Lecture Notes in Computer Science (to appear 2005).
Peng Yin, Andrew J. Turberfield, Sudheer Sahu, & John H. Reif (2004) Design of an Autonomous DNA Nanomechanical Device Capable of Universal Computation and Universal Translational Motion. Tenth International Meeting on DNA Computing (DNA10), Milano, Italy, June 7-10, 2004. Lecture Notes in Computer Science (to appear 2005).

Surveys in DNA Nanoscience

Hao Yan, Peng Yin, Sung Ha Park, Hanying Li, Liping Feng, Xiaoju Guan, Dage Liu, John H. Reif, & Thomas H. LaBean (2004) Self-assembled DNA Structures for Nanoconstruction. International Symposium on DNA-Based Molecular Electronics, Jena, Germany, May, 2004. Fritzsche, W. eds. AIP Conference Proceedings, 725, American Institute of Physics. pp. 43-52.
John H. Reif, Thomas H. LaBean, Sudheer Sahu, Hao Yan, & Peng Yin (2004) Design, Simulation, and Experimental Demonstration of Self-Assembled DNA Nanostructures and DNA Motors. Unconventional Programming Paradigms (UPP), September 2004, Lecture Notes in Computer Science (to appear 2005).
Thomas H. LaBean, Hao Yan, Sung Ha Park, Liping Feng, Peng Yin, Hanying Li, Sang Jung Ahn, Dage Liu, Xiaoju Guan, & John H. Reif (2004) Overview of New Structures for DNA-Based Nanofabrication and Computation. Invited paper to Information Sciences. (to appear 2004).

Computational Biology

Peng Yin & Alexander J. Hartemink (2005) Theoretical and Practical Advances in Genome Halving. Bioinformatics, 21, April 2005. pp. 869–879.

Experimental Biology

Alexander Sekulic, Christine C. Hudson, James L. Homme, Peng Yin, Diane M. Otterness, Larry M. Karnitz, & Robert T. Abraham (2000). A Direct Linkage Between the Phosphoinositide 3-Kinase-AKT Signaling Pathway and the Mammalian Target of Rapamycin in Mitogen-Stimulated and Transformed Cells. Cancer Research. 2000 Jul 1;60(13):3504-13.

Algorithms and Complexity

Pankaj K. Agarwal, Yusu Wang, & Peng Yin (2005) Lower Bound for Sparse Euclidean Spanners. ACM-SIAM Symposium on Discrete Algorithms, January 2005 (SODA'05). pp. 670-671.