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Jianyang (Michael) Zeng's Publications

Protein Structures

• Solution structure of the FF Domain 2 of human transcription elongation factor CA150. J. Zeng, J. Boyles, C. Tripathy, A. Yan, P. Zhou, B.R. Donald. PDB ID: 2KIQ. (2009).

Publications

• Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou, Bruce R. Donald. Protein Loop Closure using Orientational Restraints from NMR Data. Proteins: Structure, Function, and Bioinformatics. 2011. Cover Article . PDF.
• Jianyang Zeng, Kyle E. Roberts, Pei Zhou, Bruce R. Donald. A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. Journal of Computational Biology. 2011 Nov;18(11):1661-79. Epub 2011 Oct 4. PDF.
• Jianyang Zeng, Pei Zhou, Bruce R. Donald. Protein Side-Chain Resonance Assignment and NOE Assignment Using RDC-Defined Backbones without TOCSY Data. Journal of Biomolecular NMR. 2011 Aug;50(4):371-95. Epub 2011 Jun 25. PDF. Software.
• Jianyang Zeng, Kyle E. Roberts, Pei Zhou, Bruce R. Donald. A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. International Conference on Research in Computational Molecular Biology (RECOMB'11). Vancouver, 2011. PDF.
• Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou, Bruce R. Donald. Protein Loop Closure using Orientational Restraints from NMR Data. International Conference on Research in Computational Molecular Biology (RECOMB'11). Vancouver, 2011. PDF.
• Jianyang Zeng, Pei Zhou, Bruce R. Donald. A Markov Random Field Framework for Protein Side-Chain Resonance Assignment. International Conference on Research in Computational Molecular Biology (RECOMB'10). Lisbon, Portugal. April, 2010. PDF, Supplementary Materials.
• Jianyang Zeng, Jeffrey Boyles, Chittaranjan Tripathy, Lincong Wang, Anthony Yan, Pei Zhou, Bruce R. Donald. High-Resolution Protein Structure Determination Starting with a Global Fold Calculated from Exact Solutions to the RDC Equations. Journal of Biomolecular NMR. 45(3):265-281. 2009. PDF, Supplementary Materials, PDB Structure: 2KIQ. Software. PMID: 19711185.
• Jianyang Zeng, Chittaranjan Tripathy, Pei Zhou, Bruce R. Donald. A Hausdorff-Based NOE Assignment Algorithm Using Protein Backbone Determined from Residual Dipolar Couplings and Rotamer Patterns. Proceedings of the 7th Annual International Conference on Computational Systems Bioinformatics (CSB'08), Stanford CA, pp. 169-181, August 26-29, 2008. Supplementary Material. PMID: 19642278.
• Jianyang Zeng, Wen-Jing Hsu. Conflict-Free Container Routing in Mesh Yard Layouts. Robotics and Autonomous Systems, Elsevier, Vol. 56(5), pp.451-460, 2008.
• Jianyang Zeng, Chittaranjan Tripathy, Pei Zhou, Bruce R. Donald. Automated Structure Determination from Sparse NMR Data. 6th NIH/NIGMS Protein Structure Initiative "Bottlenecks" Workshop, Natcher Conference Center, NIH, Bethesda, Maryland. March 19-20, 2007. Poster.
• Jianyang Zeng, Wen-Jing Hsu. Optimal Routing in a Small-World Network. Journal of Computer Science and Technology, 21(4):476-481, 2006.
• Jianyang Zeng, Wen-Jing Hsu. Optimal Routing in a Small-World Network. Proceedings of the 6th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT'05), Dalian, China, 5-8 December 2005. (Acceptance rate: around 25%.) Best Paper Award.
• Jianyang Zeng and Wen-Jing Hsu. ReCord: A Distributed Hash Table with Recursive Structure. Proceedings of the 6th International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT'05), Dalian, China, 5-8 December 2005. (Acceptance rate: around 25%.)
• Jianyang Zeng, Wen-Jing Hsu and Suiping Zhou. Construction of Scale-Free Networks with Partial Information. Proceedings of the Eleventh International Computing and Combinatorics Conference (COCOON 2005), 2005. (Acceptance rate: around 27%.)
• Jianyang Zeng, Wen-Jing Hsu and Jiangdian Wang. Near Optimal Routing for Small-World Networks with Augmented Local Awareness. Proceedings of the 3rd International Symposium on Parallel and Distributed Processing and Applications (ISPA'2005), Nanjing ,China , 2-5 Nov. 2005.
• Jianyang Zeng and Wen-Jing Hsu. Off-Line AGV Routing on the 2D Mesh Topology with Partial Permutation. Proceedings of the IEEE 6th International Conference on Intelligent Transportation Systems (ITSC 2003), Shanghai, China, October 12 - 15, 2003.(pdf) (ppt)
• Jianyang Zeng and Wen-Jing Hsu. Conflict-Free Routing of AGVs on the Mesh Topology Based on a Discrete-Time Model. Proceedings of 2003 IEEE International Conference on Robotics and Automation (ICRA2003), Taipei, Taiwan, Sep 14-19, 2003. (pdf) (ps)
• Jianyang Zeng, Wen-Jing Hsu and Voon Yee Vee. An AGV-Routing Algorithm in the Mesh Topology with Random Partial Permutation. Proceedings of the 11th International Conference on Advanced Robotics (ICAR2003), University of Coimbra, Portugal, June 30 - July 3, 2003. (pdf)
• Jianyang Zeng, Wen-Jing Hsu and Ling Qiu. An Energy-Efficient Algorithm For Conflict-Free AGV Routing On A Linear Path Layout. Proceedings of the International Computer Symposium 2002 (ICS 2002), Hualian, Taiwan, Dec. 18-21, 2002. (pdf) (ps)
• Long Chen, Guodong Lu and Jianyang Zeng. Generation and Adjustment of Dimensional Models Based on Functional Semantics. China Mechanical Engineering. 2007. (In Chinese ).
• Jianyang Zeng, Yueding Shi and Guodong Lu. An Automated Dimensioning Approach Based on the Functional Semantics. China Mechanical Engineering. Vol. 14 (16), 2002. (In Chinese ).

Technical Reports

• Jianyang Zeng, Wen-Jing Hsu and Yahong Hu. Looking Further Ahead Reveals An Even Smaller World. Technical report CAIS-TR-2004-003, Centre for Advanced Information Systems, School of Computer Engineering, Nanyang Technological University. July, 2004.
• Jianyang Zeng, Wen-Jing Hsu and Voon Yee Vee. An AGV-Routing Algorithm in the Mesh Topology with Random Partial Permutation. Technical report CAIS-TR-03-50, Centre for Advanced Information Systems, School of Computer Engineering, Nanyang Technological University. 2003.